Mercurial > repos > iuc > gemini_actionable_mutations

diff gemini_actionable_mutations.xml @ 5:643a9ad97f08 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 62ed732cba355e695181924a8ed4cce49ca21c59
author iuc
date Fri, 11 Jan 2019 17:49:17 -0500
parents 712aa8283200
children db47f4939381
line wrap: on
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--- a/gemini_actionable_mutations.xml	Fri Dec 14 12:56:28 2018 -0500
+++ b/gemini_actionable_mutations.xml	Fri Jan 11 17:49:17 2019 -0500
@@ -1,4 +1,4 @@
-<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
+<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@">
     <description>Retrieve genes with actionable somatic mutations via COSMIC and DGIdb</description>
     <macros>
         <import>gemini_macros.xml</import>
@@ -10,8 +10,8 @@
     <command>
 <![CDATA[
         gemini @BINARY@
-            "${ infile }" | tr -s ' ' '\t'
-            > "${ outfile }"
+            '$infile' | tr -s ' ' '\t'
+            > '$outfile'
 ]]>
     </command>
     <inputs>