Mercurial > repos > iuc > gemini_fusions
comparison gemini_fusions.xml @ 5:6e3d2bd01a96 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 62ed732cba355e695181924a8ed4cce49ca21c59
| author | iuc |
|---|---|
| date | Fri, 11 Jan 2019 17:42:53 -0500 |
| parents | b35fd707c586 |
| children | c00dcd1455a0 |
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| 4:b35fd707c586 | 5:6e3d2bd01a96 |
|---|---|
| 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1"> | 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@"> |
| 2 <description>Identify somatic fusion genes from a GEMINI database</description> | 2 <description>Identify somatic fusion genes from a GEMINI database</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>gemini_macros.xml</import> | 4 <import>gemini_macros.xml</import> |
| 5 <token name="@BINARY@">fusions</token> | 5 <token name="@BINARY@">fusions</token> |
| 6 </macros> | 6 </macros> |
| 21 | 21 |
| 22 #if str($evidence_type): | 22 #if str($evidence_type): |
| 23 --evidence_type $evidence_type | 23 --evidence_type $evidence_type |
| 24 #end if | 24 #end if |
| 25 | 25 |
| 26 "${ infile }" | tr -s ' ' '\t' | 26 '$infile' | tr -s ' ' '\t' |
| 27 > "${ outfile }" | 27 > '$outfile' |
| 28 ]]> | 28 ]]> |
| 29 </command> | 29 </command> |
| 30 <inputs> | 30 <inputs> |
| 31 | 31 |
| 32 <expand macro="infile" /> | 32 <expand macro="infile" /> |