comparison gemini_lof_sieve.xml @ 4:93a391b4602c draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313

3:90021fffff70

<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
    <description>Filter LoF variants by transcript position and type</description>
    <macros>
        <import>gemini_macros.xml</import>
        <token name="@BINARY@">lof_sieve</token>
    </macros>

    <outputs>
        <data name="outfile" format="tabular" />
    </outputs>
    <tests>
        <test>
            <param name="infile" value="gemini_burden_input.db" ftype="gemini.sqlite" />
            <output name="outfile" file="gemini_lofsieve_result.tabular" />
        </test>
    </tests>
    <help><![CDATA[
**What it does**

4:93a391b4602c

<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
    <description>Filter LoF variants by transcript position and type</description>
    <macros>
        <import>gemini_macros.xml</import>
        <token name="@BINARY@">lof_sieve</token>
    </macros>

    <outputs>
        <data name="outfile" format="tabular" />
    </outputs>
    <tests>
        <test>
            <param name="infile" value="gemini_load_result1.db" ftype="gemini.sqlite" />
            <output name="outfile">
                <assert_contents>
                    <has_line_matching expression="chrom&#009;start&#009;end&#009;.*highest_impact.*" />
                </assert_contents>
            </output>
        </test>
    </tests>
    <help><![CDATA[
**What it does**