Mercurial > repos > iuc > gemini_lof_sieve
comparison gemini_lof_sieve.xml @ 4:93a391b4602c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313
author | iuc |
---|---|
date | Fri, 14 Dec 2018 12:48:41 -0500 |
parents | be7ac09bc2fa |
children | dda378a72430 |
comparison
equal
deleted
inserted
replaced
3:90021fffff70 | 4:93a391b4602c |
---|---|
1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0"> | 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1"> |
2 <description>Filter LoF variants by transcript position and type</description> | 2 <description>Filter LoF variants by transcript position and type</description> |
3 <macros> | 3 <macros> |
4 <import>gemini_macros.xml</import> | 4 <import>gemini_macros.xml</import> |
5 <token name="@BINARY@">lof_sieve</token> | 5 <token name="@BINARY@">lof_sieve</token> |
6 </macros> | 6 </macros> |
20 <outputs> | 20 <outputs> |
21 <data name="outfile" format="tabular" /> | 21 <data name="outfile" format="tabular" /> |
22 </outputs> | 22 </outputs> |
23 <tests> | 23 <tests> |
24 <test> | 24 <test> |
25 <param name="infile" value="gemini_burden_input.db" ftype="gemini.sqlite" /> | 25 <param name="infile" value="gemini_load_result1.db" ftype="gemini.sqlite" /> |
26 <output name="outfile" file="gemini_lofsieve_result.tabular" /> | 26 <output name="outfile"> |
27 <assert_contents> | |
28 <has_line_matching expression="chrom	start	end	.*highest_impact.*" /> | |
29 </assert_contents> | |
30 </output> | |
27 </test> | 31 </test> |
28 </tests> | 32 </tests> |
29 <help><![CDATA[ | 33 <help><![CDATA[ |
30 **What it does** | 34 **What it does** |
31 | 35 |