Mercurial > repos > iuc > gemini_lof_sieve

diff gemini_lof_sieve.xml @ 4:93a391b4602c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313
author iuc
date Fri, 14 Dec 2018 12:48:41 -0500
parents be7ac09bc2fa
children dda378a72430
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--- a/gemini_lof_sieve.xml	Wed Oct 17 13:27:38 2018 -0400
+++ b/gemini_lof_sieve.xml	Fri Dec 14 12:48:41 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
+<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
     <description>Filter LoF variants by transcript position and type</description>
     <macros>
         <import>gemini_macros.xml</import>
@@ -22,8 +22,12 @@
     </outputs>
     <tests>
         <test>
-            <param name="infile" value="gemini_burden_input.db" ftype="gemini.sqlite" />
-            <output name="outfile" file="gemini_lofsieve_result.tabular" />
+            <param name="infile" value="gemini_load_result1.db" ftype="gemini.sqlite" />
+            <output name="outfile">
+                <assert_contents>
+                    <has_line_matching expression="chrom&#009;start&#009;end&#009;.*highest_impact.*" />
+                </assert_contents>
+            </output>
         </test>
     </tests>
     <help><![CDATA[