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changeset 2:8353f3cc03db draft default tip

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"planemo upload for repository https://github.com/jsh58/Genrich commit 62a6ec655d7743ce084e45ba02b495e8bd2dc06c"
author iuc
date Thu, 29 Aug 2019 10:42:38 -0400
parents db50f51a2952
children
files genrich.xml test-data/CTCF_PE_CTRL_chr22_2.bam test-data/CTCF_PE_ChIP_chr22_2.bam test-data/Pool.bed test-data/Pool.encodepeak test-data/Pool1.bedgraph test-data/Pool2.bedgraph
diffstat 7 files changed, 8156 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/genrich.xml	Sat Aug 17 16:24:04 2019 -0400
+++ b/genrich.xml	Thu Aug 29 10:42:38 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="genrich" name="Genrich" version="0.5+galaxy1">
+<tool id="genrich" name="Genrich" version="0.5+galaxy2">
     <description>Detecting sites of genomic enrichment</description>
     <requirements>
         <requirement type="package" version="0.5">genrich</requirement>
@@ -19,7 +19,7 @@
 
 ## Treatment File(s)
 #if str($treatment.t_multi_select) == "Yes":
-    -t ${ ' '.join( [ "'%s'" %  $x for $x in $treatment.input_treatment_file] ) }
+    -t ${ ','.join( [ "'%s'" %  $x for $x in $treatment.input_treatment_file] ) }
 #else
     -t '$treatment.input_treatment_file'
 #end if
@@ -27,7 +27,7 @@
 ## Control File(s)
 #if str($control.c_select) == "Yes":
     #if str($control.c_multiple.c_multi_select) == "Yes":
-        -c ${ ' '.join( [ "'%s'" %  $x for $x in $control.c_multiple.input_control_file] ) }
+        -c ${ ','.join( [ "'%s'" %  $x for $x in $control.c_multiple.input_control_file] ) }
     #else
         -c '$control.c_multiple.input_control_file'
     #end if
@@ -251,6 +251,21 @@
             <output name="out_bedgraph2" ftype="bedgraph" file="CTCF2.bedgraph" compare="contains" lines_diff="1" />
             <output name="out_bed" ftype="bed" file="CTCF.bed" />
         </test>
+        <!-- ChIP Test Data for Pooled Data (Replicates)-->
+        <test expect_num_outputs="4">
+            <param name="input_treatment_file" ftype="bam" value="CTCF_PE_ChIP_chr22.bam,CTCF_PE_ChIP_chr22_2.bam" />
+            <param name="input_control_file" ftype="bam" value="CTCF_PE_CTRL_chr22.bam,CTCF_PE_CTRL_chr22_2.bam" />
+            <param name="c_select" value="Yes" />
+            <param name="t_multi_select" value="Yes" />
+            <param name="c_multi_select" value="Yes" />
+            <param name="bedgraph1" value="True" />
+            <param name="bedgraph2" value="True" />
+            <param name="bed" value="True" />
+            <output name="outfile" ftype="encodepeak" file="Pool.encodepeak" />
+            <output name="out_bedgraph1" ftype="bedgraph" file="Pool1.bedgraph" />
+            <output name="out_bedgraph2" ftype="bedgraph" file="Pool2.bedgraph" compare="contains" lines_diff="2" />
+            <output name="out_bed" ftype="bed" file="Pool.bed" />
+        </test>
     </tests>
     <help><![CDATA[
 
Binary file test-data/CTCF_PE_CTRL_chr22_2.bam has changed
Binary file test-data/CTCF_PE_ChIP_chr22_2.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/Pool.bed	Thu Aug 29 10:42:38 2019 -0400
@@ -0,0 +1,1910 @@
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+chr22	40259207	40259527	MONK:4:1101:1793:108713#ATCACG_1_C_1
+chr22	38995383	38995725	MONK:4:1101:1795:162616#ATCACG_1_C_1
+chr22	20880489	20880890	MONK:4:1101:1802:123365#ATCACG_1_C_1
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+chr22	25436926	25437321	MONK:4:1101:1804:9967#ATCACG_1_C_1
+chr22	42196542	42196902	MONK:4:1101:1805:57203#ATCACG_1_C_1
+chr22	27547998	27548334	MONK:4:1101:1808:175736#ATCACG_1_C_1
+chr22	22141904	22142140	MONK:4:1101:1809:13137#ATCACG_1_C_1
+chr22	29272142	29272423	MONK:4:1101:1809:68540#ATCACG_1_C_1
+chr22	31137096	31137378	MONK:4:1101:1811:38390#ATCACG_1_C_1
+chr22	29874697	29875004	MONK:4:1101:1813:24261#ATCACG_1_C_1
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+chr22	19157356	19157690	MONK:4:1101:1822:135235#ATCACG_1_C_1
+chr22	37325794	37326113	MONK:4:1101:1828:14529#ATCACG_1_C_1
+chr22	20278392	20278691	MONK:4:1101:1830:162270#ATCACG_1_C_1
+chr22	19936838	19937122	MONK:4:1101:1831:39968#ATCACG_1_C_1
+chr22	31612830	31613145	MONK:4:1101:1833:50241#ATCACG_1_C_1
+chr22	23527934	23528232	MONK:4:1101:1834:12129#ATCACG_1_C_1
+chr22	23349213	23349543	MONK:4:1101:1835:82137#ATCACG_1_C_1
+chr22	35799166	35799453	MONK:4:1101:1841:113169#ATCACG_1_C_1
+chr22	18394708	18395062	MONK:4:1101:1841:129676#ATCACG_1_C_1
+chr22	29360251	29360580	MONK:4:1101:1844:198312#ATCACG_1_C_1
+chr22	21248461	21248844	MONK:4:1101:1846:128283#ATCACG_1_C_1
+chr22	29773681	29773991	MONK:4:1101:1847:166674#ATCACG_1_C_1
+chr22	37309558	37309916	MONK:4:1101:1854:47386#ATCACG_1_C_1
+chr22	35522946	35523202	MONK:4:1101:1855:135650#ATCACG_1_C_1
+chr22	39868234	39868603	MONK:4:1101:1858:148269#ATCACG_1_C_1
+chr22	45350897	45351230	MONK:4:1101:1861:44823#ATCACG_1_C_1
+chr22	22006074	22006464	MONK:4:1101:1861:150391#ATCACG_1_C_1
+chr22	23962604	23963004	MONK:4:1101:1862:51394#ATCACG_1_C_1
+chr22	32220968	32221234	MONK:4:1101:1863:196644#ATCACG_1_C_1
+chr22	43002858	43003207	MONK:4:1101:1866:200485#ATCACG_1_C_1
+chr22	47924600	47924902	MONK:4:1101:1869:175877#ATCACG_1_C_1
+chr22	38271180	38271540	MONK:4:1101:1870:58365#ATCACG_1_C_1
+chr22	25771857	25772186	MONK:4:1101:1870:176056#ATCACG_1_C_1
+chr22	34688810	34689115	MONK:4:1101:1872:100464#ATCACG_1_C_1
+chr22	40664716	40664980	MONK:4:1101:1872:167064#ATCACG_1_C_1
+chr22	41155395	41155761	MONK:4:1101:1873:196112#ATCACG_1_C_1
+chr22	21313186	21313566	MONK:4:1101:1877:115485#ATCACG_1_C_1
+chr22	17574927	17575208	MONK:4:1101:1885:95375#ATCACG_1_C_1
+chr22	31548442	31548773	MONK:4:1101:1885:134476#ATCACG_1_C_1
+chr22	50728249	50728594	MONK:4:1101:1885:167267#ATCACG_1_C_1
+chr22	46177227	46177497	MONK:4:1101:1885:171014#ATCACG_1_C_1
+chr22	47396789	47397152	MONK:4:1101:1886:19535#ATCACG_1_C_1
+chr22	24180187	24180543	MONK:4:1101:1886:121532#ATCACG_1_C_1
+chr22	41293748	41294044	MONK:4:1101:1889:105577#ATCACG_1_C_1
+chr22	19717760	19718074	MONK:4:1101:1889:162959#ATCACG_1_C_1
+chr22	46179936	46180244	MONK:4:1101:1891:32806#ATCACG_1_C_1
+chr22	40349979	40350319	MONK:4:1101:1894:111382#ATCACG_1_C_1
+chr22	45363719	45364012	MONK:4:1101:1895:168583#ATCACG_1_C_1
+chr22	39237864	39238175	MONK:4:1101:1897:178908#ATCACG_1_C_1
+chr22	32179203	32179465	MONK:4:1101:1898:19814#ATCACG_1_C_1
+chr22	38699259	38699611	MONK:4:1101:1901:93544#ATCACG_1_C_1
+chr22	33703606	33704004	MONK:4:1101:1904:155633#ATCACG_1_C_1
+chr22	42331979	42332254	MONK:4:1101:1905:50076#ATCACG_1_C_1
+chr22	45695208	45695542	MONK:4:1101:1907:10761#ATCACG_1_C_1
+chr22	35702558	35702922	MONK:4:1101:1908:159585#ATCACG_1_C_1
+chr22	36291590	36291793	MONK:4:1101:1913:197165#ATCACG_1_C_1
+chr22	19465462	19465807	MONK:4:1101:1917:34367#ATCACG_1_C_1
+chr22	35853214	35853511	MONK:4:1101:1918:12274#ATCACG_1_C_1
+chr22	34837030	34837358	MONK:4:1101:1920:150249#ATCACG_1_C_1
+chr22	26453071	26453374	MONK:4:1101:1922:130346#ATCACG_1_C_1
+chr22	37254955	37255304	MONK:4:1101:1922:192947#ATCACG_1_C_1
+chr22	44467205	44467519	MONK:4:1101:1923:51358#ATCACG_1_C_1
+chr22	27746093	27746369	MONK:4:1101:1925:109785#ATCACG_1_C_1
+chr22	20830229	20830574	MONK:4:1101:1926:13391#ATCACG_1_C_1
+chr22	32644614	32644907	MONK:4:1101:1932:173355#ATCACG_1_C_1
+chr22	23326830	23327131	MONK:4:1101:1932:186840#ATCACG_1_C_1
+chr22	18137643	18137939	MONK:4:1101:1935:79824#ATCACG_1_C_1
+chr22	36556475	36556849	MONK:4:1101:1938:65170#ATCACG_1_C_1
+chr22	31258033	31258410	MONK:4:1101:1938:118226#ATCACG_1_C_1
+chr22	23794579	23794934	MONK:4:1101:1939:31618#ATCACG_1_C_1
+chr22	39924723	39925017	MONK:4:1101:1939:176403#ATCACG_1_C_1
+chr22	32799619	32799903	MONK:4:1101:1940:176731#ATCACG_1_C_1
+chr22	40196637	40196981	MONK:4:1101:1941:140996#ATCACG_1_C_1
+chr22	44259670	44259985	MONK:4:1101:1942:98897#ATCACG_1_C_1
+chr22	25010868	25011132	MONK:4:1101:1944:21712#ATCACG_1_C_1
+chr22	34156563	34156826	MONK:4:1101:1944:93018#ATCACG_1_C_1
+chr22	34237376	34237717	MONK:4:1101:1945:94264#ATCACG_1_C_1
+chr22	48020580	48020954	MONK:4:1101:1948:58029#ATCACG_1_C_1
+chr22	50451024	50451324	MONK:4:1101:1949:21741#ATCACG_1_C_1
+chr22	45750197	45750543	MONK:4:1101:1950:79402#ATCACG_1_C_1
+chr22	30588762	30589089	MONK:4:1101:1951:35853#ATCACG_1_C_1
+chr22	35901849	35902253	MONK:4:1101:1952:19211#ATCACG_1_C_1
+chr22	45352923	45353266	MONK:4:1101:1952:20001#ATCACG_1_C_1
+chr22	30702262	30702594	MONK:4:1101:1952:116627#ATCACG_1_C_1
+chr22	46059105	46059415	MONK:4:1101:1954:57819#ATCACG_1_C_1
+chr22	38903368	38903735	MONK:4:1101:1956:144084#ATCACG_1_C_1
+chr22	24472660	24472914	MONK:4:1101:1958:81629#ATCACG_1_C_1
+chr22	19360117	19360433	MONK:4:1101:1963:74990#ATCACG_1_C_1
+chr22	32336008	32336375	MONK:4:1101:1968:106695#ATCACG_1_C_1
+chr22	17331220	17331528	MONK:4:1101:1970:71843#ATCACG_1_C_1
+chr22	29017947	29018261	MONK:4:1101:1972:80170#ATCACG_1_C_1
+chr22	43507114	43507334	MONK:4:1101:1974:61689#ATCACG_1_C_1
+chr22	31250898	31251186	MONK:4:1101:1974:89491#ATCACG_1_C_1
+chr22	40111692	40111971	MONK:4:1101:1978:148397#ATCACG_1_C_1
+chr22	35457350	35457641	MONK:4:1101:1980:173169#ATCACG_1_C_1
+chr22	46079935	46080216	MONK:4:1101:1987:14518#ATCACG_1_C_1
+chr22	47580463	47580834	MONK:4:1101:1987:80549#ATCACG_1_C_1
+chr22	50049313	50049602	MONK:4:1101:1988:110312#ATCACG_1_C_1
+chr22	35705660	35705972	MONK:4:1101:1989:137656#ATCACG_1_C_1
+chr22	36020858	36021181	MONK:4:1101:1992:90060#ATCACG_1_C_1
+chr22	32626046	32626344	MONK:4:1101:1993:22677#ATCACG_1_C_1
+chr22	47214755	47215042	MONK:4:1101:1994:49366#ATCACG_1_C_1
+chr22	39021453	39021720	MONK:4:1101:1999:129446#ATCACG_1_C_1
+chr22	22030286	22030701	MONK:4:1101:2000:62918#ATCACG_1_C_1
+chr22	23206691	23206983	MONK:4:1101:2011:74371#ATCACG_1_C_1
+chr22	45637193	45637471	MONK:4:1101:2012:54686#ATCACG_1_C_1
+chr22	45567139	45567424	MONK:4:1101:2013:12466#ATCACG_1_C_1
+chr22	36916836	36917107	MONK:4:1101:2016:152129#ATCACG_1_C_1
+chr22	28980427	28980742	MONK:4:1101:2016:178494#ATCACG_1_C_1
+chr22	30986190	30986489	MONK:4:1101:2018:102633#ATCACG_1_C_1
+chr22	20865150	20865397	MONK:4:1101:2019:157503#ATCACG_1_C_1
+chr22	42327577	42327962	MONK:4:1101:2023:98613#ATCACG_1_C_1
+chr22	38206106	38206381	MONK:4:1101:2031:188437#ATCACG_1_C_1
+chr22	24763500	24763803	MONK:4:1101:2035:190338#ATCACG_1_C_1
+chr22	22005703	22006006	MONK:4:1101:2036:149760#ATCACG_1_C_1
+chr22	21265687	21266111	MONK:4:1101:2036:162467#ATCACG_1_C_1
+chr22	24796223	24796573	MONK:4:1101:2041:13081#ATCACG_1_C_1
+chr22	20903546	20903860	MONK:4:1101:2043:44900#ATCACG_1_C_1
+chr22	44947744	44948083	MONK:4:1101:2045:136863#ATCACG_1_C_1
+chr22	35636457	35636824	MONK:4:1101:2047:115492#ATCACG_1_C_1
+chr22	44562366	44562744	MONK:4:1101:2048:196819#ATCACG_1_C_1
+chr22	24582402	24582746	MONK:4:1101:2049:58183#ATCACG_1_C_1
+chr22	26010455	26010720	MONK:4:1101:2050:5906#ATCACG_1_C_1
+chr22	45463711	45464061	MONK:4:1101:2054:61445#ATCACG_1_C_1
+chr22	39339209	39339568	MONK:4:1101:2055:47818#ATCACG_1_C_1
+chr22	37702677	37702998	MONK:4:1101:2056:18419#ATCACG_1_C_1
+chr22	37214433	37214750	MONK:4:1101:2058:70645#ATCACG_1_C_1
+chr22	28314510	28314866	MONK:4:1101:2059:89462#ATCACG_1_C_1
+chr22	37825262	37825575	MONK:4:1101:2059:196988#ATCACG_1_C_1
+chr22	18141593	18141906	MONK:4:1101:2060:13739#ATCACG_1_C_1
+chr22	39925680	39926050	MONK:4:1101:2060:57734#ATCACG_1_C_1
+chr22	30580500	30580828	MONK:4:1101:2061:170858#ATCACG_1_C_1
+chr22	23028992	23029360	MONK:4:1101:2064:103362#ATCACG_1_C_1
+chr22	23528598	23528875	MONK:4:1101:2066:182063#ATCACG_1_C_1
+chr22	44874800	44875183	MONK:4:1101:2068:7662#ATCACG_1_C_1
+chr22	39584484	39584818	MONK:4:1101:2068:77978#ATCACG_1_C_1
+chr22	33797772	33798061	MONK:4:1101:2068:100271#ATCACG_1_C_1
+chr22	35986252	35986607	MONK:4:1101:2070:23404#ATCACG_1_C_1
+chr22	27311920	27312230	MONK:4:1101:2070:30134#ATCACG_1_C_1
+chr22	36963258	36963578	MONK:4:1101:2073:141053#ATCACG_1_C_1
+chr22	19307238	19307559	MONK:4:1101:2073:146945#ATCACG_1_C_1
+chr22	31219645	31219924	MONK:4:1101:2074:66425#ATCACG_1_C_1
+chr22	19541960	19542242	MONK:4:1101:2075:118078#ATCACG_1_C_1
+chr22	27264361	27264647	MONK:4:1101:2077:158799#ATCACG_1_C_1
+chr22	42257620	42257866	MONK:4:1101:2077:197509#ATCACG_1_C_1
+chr22	35098395	35098663	MONK:4:1101:2083:101663#ATCACG_1_C_1
+chr22	20919441	20919738	MONK:4:1101:2089:170479#ATCACG_1_C_1
+chr22	51103700	51104012	MONK:4:1101:2091:141368#ATCACG_1_C_1
+chr22	40869949	40870251	MONK:4:1101:2091:200382#ATCACG_1_C_1
+chr22	45587887	45588179	MONK:4:1101:2092:30754#ATCACG_1_C_1
+chr22	30805512	30805877	MONK:4:1101:2099:16909#ATCACG_1_C_1
+chr22	44033966	44034285	MONK:4:1101:2099:32241#ATCACG_1_C_1
+chr22	41128651	41128939	MONK:4:1101:2103:85862#ATCACG_1_C_1
+chr22	28533601	28533854	MONK:4:1101:2106:138815#ATCACG_1_C_1
+chr22	22154290	22154577	MONK:4:1101:2114:80529#ATCACG_1_C_1
+chr22	38039414	38039729	MONK:4:1101:2120:28549#ATCACG_1_C_1
+chr22	39540350	39540559	MONK:4:1101:2121:154878#ATCACG_1_C_1
+chr22	20884321	20884672	MONK:4:1101:2127:115141#ATCACG_1_C_1
+chr22	24551823	24552160	MONK:4:1101:2130:172811#ATCACG_1_C_1
+chr22	18259249	18259606	MONK:4:1101:2132:95793#ATCACG_1_C_1
+chr22	25373041	25373209	MONK:4:1101:2132:128439#ATCACG_1_C_1
+chr22	32529163	32529537	MONK:4:1101:2132:137046#ATCACG_1_C_1
+chr22	38822667	38823045	MONK:4:1101:2134:94771#ATCACG_1_C_1
+chr22	26159451	26159615	MONK:4:1101:2138:27181#ATCACG_1_C_1
+chr22	34441238	34441585	MONK:4:1101:2139:139454#ATCACG_1_C_1
+chr22	45610815	45611077	MONK:4:1101:2139:183067#ATCACG_1_C_1
+chr22	39671600	39671996	MONK:4:1101:2144:33342#ATCACG_1_C_1
+chr22	45926669	45926955	MONK:4:1101:2145:111087#ATCACG_1_C_1
+chr22	42353807	42353994	MONK:4:1101:2147:150414#ATCACG_1_C_1
+chr22	24153559	24153892	MONK:4:1101:2149:92715#ATCACG_1_C_1
+chr22	18633120	18633461	MONK:4:1101:2149:117901#ATCACG_1_C_1
+chr22	28398677	28398947	MONK:4:1101:2154:12577#ATCACG_1_C_1
+chr22	21293552	21293918	MONK:4:1101:2156:25409#ATCACG_1_C_1
+chr22	41276700	41276988	MONK:4:1101:2159:7211#ATCACG_1_C_1
+chr22	48967117	48967481	MONK:4:1101:2167:87699#ATCACG_1_C_1
+chr22	35225703	35226036	MONK:4:1101:2169:189605#ATCACG_1_C_1
+chr22	26683772	26684132	MONK:4:1101:2170:100928#ATCACG_1_C_1
+chr22	43356750	43357110	MONK:4:1101:2172:94564#ATCACG_1_C_1
+chr22	42949335	42949675	MONK:4:1101:2174:117708#ATCACG_1_C_1
+chr22	48493138	48493460	MONK:4:1101:2178:193175#ATCACG_1_C_1
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/Pool.encodepeak	Thu Aug 29 10:42:38 2019 -0400
@@ -0,0 +1,421 @@
+chr22	16874913	16875110	peak_0	1000	.	9577.258789	55.526501	49.916557	98
+chr22	17377196	17377428	peak_1	1000	.	11278.802734	55.526501	49.916557	116
+chr22	17555930	17556245	peak_2	1000	.	15313.891602	55.526501	49.916557	157
+chr22	17652822	17653159	peak_3	1000	.	17977.361328	62.919518	56.241673	145
+chr22	17686483	17686744	peak_4	1000	.	12688.653320	55.526501	49.916557	130
+chr22	17718259	17718522	peak_5	1000	.	12785.883789	55.526501	49.916557	131
+chr22	17836468	17836780	peak_6	1000	.	15168.044922	55.526501	49.916557	156
+chr22	17847348	17847549	peak_7	1000	.	9771.720703	55.526501	49.916557	100
+chr22	17979862	17980115	peak_8	1000	.	12299.728516	55.526501	49.916557	126
+chr22	17999764	17999976	peak_9	1000	.	10306.492188	55.526501	49.916557	106
+chr22	18178995	18179198	peak_10	1000	.	9868.952148	55.526501	49.916557	101
+chr22	18225329	18225542	peak_11	1000	.	10355.107422	55.526501	49.916557	106
+chr22	18267916	18268161	peak_12	1000	.	11910.804688	55.526501	49.916557	122
+chr22	18281979	18282182	peak_13	1000	.	9868.952148	55.526501	49.916557	101
+chr22	18379432	18379662	peak_14	1000	.	11181.571289	55.526501	49.916557	115
+chr22	18548727	18548914	peak_15	1000	.	9091.103516	55.526501	49.916557	93
+chr22	18558818	18559167	peak_16	1000	.	17820.708984	62.919518	56.241673	213
+chr22	18559279	18559477	peak_17	1000	.	9625.875000	55.526501	49.916557	99
+chr22	18588889	18589127	peak_18	1000	.	11570.496094	55.526501	49.916557	119
+chr22	18632607	18632823	peak_19	1000	.	10500.954102	55.526501	49.916557	108
+chr22	18941875	18942127	peak_20	1000	.	12251.113281	55.526501	49.916557	126
+chr22	18979364	18979617	peak_21	1000	.	12299.728516	55.526501	49.916557	126
+chr22	19072523	19072736	peak_22	1000	.	10355.107422	55.526501	49.916557	106
+chr22	19073753	19074058	peak_23	1000	.	14827.736328	55.526501	49.916557	152
+chr22	19166731	19167005	peak_24	1000	.	13320.654297	55.526501	49.916557	137
+chr22	19465378	19465462	peak_25	1000	.	4083.704346	55.526501	49.916557	42
+chr22	19555413	19555614	peak_26	1000	.	9771.720703	55.526501	49.916557	100
+chr22	19617529	19617717	peak_27	1000	.	9139.719727	55.526501	49.916557	94
+chr22	19667222	19667453	peak_28	1000	.	11230.186523	55.526501	49.916557	115
+chr22	19822260	19822541	peak_29	1000	.	13660.963867	55.526501	49.916557	140
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+chr22	50965071	50965340	peak_414	1000	.	13077.577148	55.526501	49.916557	134
+chr22	50972925	50973062	peak_415	1000	.	6660.327148	55.526501	49.916557	68
+chr22	50982866	50983075	peak_416	1000	.	10160.645508	55.526501	49.916557	104
+chr22	51058888	51059217	peak_417	1000	.	15994.508789	55.526501	49.916557	164
+chr22	51066506	51066791	peak_418	1000	.	13855.425781	55.526501	49.916557	142
+chr22	51130088	51130412	peak_419	1000	.	17123.980469	62.919518	56.241673	116
+chr22	51213606	51213856	peak_420	1000	.	12153.881836	55.526501	49.916557	125
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/Pool1.bedgraph	Thu Aug 29 10:42:38 2019 -0400
@@ -0,0 +1,1935 @@
+chr	start	end	-log(p)_0	-log(p)_1	-log(p)_comb	-log(q)	signif
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+chr22	46059415	46079935	0.000000	0.000000	0.000000	0.000000
+chr22	46079935	46080216	0.000000	0.000000	0.000000	0.000000
+chr22	46080216	46091550	0.000000	0.000000	0.000000	0.000000
+chr22	46091550	46091919	0.000000	0.000000	0.000000	0.000000
+chr22	46091919	46106477	0.000000	0.000000	0.000000	0.000000
+chr22	46106477	46106774	28.826399	28.826399	55.526501	49.916557	*
+chr22	46106774	46146892	0.000000	0.000000	0.000000	0.000000
+chr22	46146892	46147239	0.000000	0.000000	0.000000	0.000000
+chr22	46147239	46177227	0.000000	0.000000	0.000000	0.000000
+chr22	46177227	46177497	0.000000	0.000000	0.000000	0.000000
+chr22	46177497	46179936	0.000000	0.000000	0.000000	0.000000
+chr22	46179936	46180244	0.000000	0.000000	0.000000	0.000000
+chr22	46180244	46183124	0.000000	0.000000	0.000000	0.000000
+chr22	46183124	46183315	28.826399	28.826399	55.526501	49.916557	*
+chr22	46183315	46290750	0.000000	0.000000	0.000000	0.000000
+chr22	46290750	46291070	0.000000	0.000000	0.000000	0.000000
+chr22	46291070	46330705	0.000000	0.000000	0.000000	0.000000
+chr22	46330705	46331037	0.000000	0.000000	0.000000	0.000000
+chr22	46331037	46364800	0.000000	0.000000	0.000000	0.000000
+chr22	46364800	46365177	0.000000	0.000000	0.000000	0.000000
+chr22	46365177	46390070	0.000000	0.000000	0.000000	0.000000
+chr22	46390070	46390323	28.826399	28.826399	55.526501	49.916557	*
+chr22	46390323	46409073	0.000000	0.000000	0.000000	0.000000
+chr22	46409073	46409404	28.826399	28.826399	55.526501	49.916557	*
+chr22	46409404	46432623	0.000000	0.000000	0.000000	0.000000
+chr22	46432623	46432677	28.826399	28.826399	55.526501	49.916557	*
+chr22	46432677	46432839	32.549095	32.549095	62.919518	56.241673	*
+chr22	46432839	46432904	28.826399	28.826399	55.526501	49.916557	*
+chr22	46432904	46512391	0.000000	0.000000	0.000000	0.000000
+chr22	46512391	46512607	28.826399	28.826399	55.526501	49.916557	*
+chr22	46512607	46518382	0.000000	0.000000	0.000000	0.000000
+chr22	46518382	46518410	28.826399	28.826399	55.526501	49.916557	*
+chr22	46518410	46518685	32.549095	32.549095	62.919518	56.241673	*
+chr22	46518685	46518701	28.826399	28.826399	55.526501	49.916557	*
+chr22	46518701	46519293	0.000000	0.000000	0.000000	0.000000
+chr22	46519293	46519467	28.826399	28.826399	55.526501	49.916557	*
+chr22	46519467	46535292	0.000000	0.000000	0.000000	0.000000
+chr22	46535292	46535640	0.000000	0.000000	0.000000	0.000000
+chr22	46535640	46541287	0.000000	0.000000	0.000000	0.000000
+chr22	46541287	46541609	0.000000	0.000000	0.000000	0.000000
+chr22	46541609	46722697	0.000000	0.000000	0.000000	0.000000
+chr22	46722697	46722886	28.826399	28.826399	55.526501	49.916557	*
+chr22	46722886	46723392	0.000000	0.000000	0.000000	0.000000
+chr22	46723392	46723692	0.000000	0.000000	0.000000	0.000000
+chr22	46723692	46751393	0.000000	0.000000	0.000000	0.000000
+chr22	46751393	46751665	28.826399	28.826399	55.526501	49.916557	*
+chr22	46751665	46907465	0.000000	0.000000	0.000000	0.000000
+chr22	46907465	46907790	0.000000	0.000000	0.000000	0.000000
+chr22	46907790	46934120	0.000000	0.000000	0.000000	0.000000
+chr22	46934120	46934311	28.826399	28.826399	55.526501	49.916557	*
+chr22	46934311	46955408	0.000000	0.000000	0.000000	0.000000
+chr22	46955408	46955639	28.826399	28.826399	55.526501	49.916557	*
+chr22	46955639	46969895	0.000000	0.000000	0.000000	0.000000
+chr22	46969895	46970107	28.826399	28.826399	55.526501	49.916557	*
+chr22	46970107	46983959	0.000000	0.000000	0.000000	0.000000
+chr22	46983959	46984233	0.000000	0.000000	0.000000	0.000000
+chr22	46984233	47019401	0.000000	0.000000	0.000000	0.000000
+chr22	47019401	47019740	28.826399	28.826399	55.526501	49.916557	*
+chr22	47019740	47035919	0.000000	0.000000	0.000000	0.000000
+chr22	47035919	47036270	0.000000	0.000000	0.000000	0.000000
+chr22	47036270	47081853	0.000000	0.000000	0.000000	0.000000
+chr22	47081853	47082149	0.000000	0.000000	0.000000	0.000000
+chr22	47082149	47089504	0.000000	0.000000	0.000000	0.000000
+chr22	47089504	47089698	28.826399	28.826399	55.526501	49.916557	*
+chr22	47089698	47135003	0.000000	0.000000	0.000000	0.000000
+chr22	47135003	47135248	28.826399	28.826399	55.526501	49.916557	*
+chr22	47135248	47154865	0.000000	0.000000	0.000000	0.000000
+chr22	47154865	47155113	28.826399	28.826399	55.526501	49.916557	*
+chr22	47155113	47158056	0.000000	0.000000	0.000000	0.000000
+chr22	47158056	47158376	28.826399	28.826399	55.526501	49.916557	*
+chr22	47158376	47214755	0.000000	0.000000	0.000000	0.000000
+chr22	47214755	47215042	0.000000	0.000000	0.000000	0.000000
+chr22	47215042	47315892	0.000000	0.000000	0.000000	0.000000
+chr22	47315892	47316206	0.000000	0.000000	0.000000	0.000000
+chr22	47316206	47393504	0.000000	0.000000	0.000000	0.000000
+chr22	47393504	47393812	0.000000	0.000000	0.000000	0.000000
+chr22	47393812	47396789	0.000000	0.000000	0.000000	0.000000
+chr22	47396789	47397152	0.000000	0.000000	0.000000	0.000000
+chr22	47397152	47580463	0.000000	0.000000	0.000000	0.000000
+chr22	47580463	47580834	0.000000	0.000000	0.000000	0.000000
+chr22	47580834	47598983	0.000000	0.000000	0.000000	0.000000
+chr22	47598983	47599240	28.826399	28.826399	55.526501	49.916557	*
+chr22	47599240	47624590	0.000000	0.000000	0.000000	0.000000
+chr22	47624590	47624857	0.000000	0.000000	0.000000	0.000000
+chr22	47624857	47672779	0.000000	0.000000	0.000000	0.000000
+chr22	47672779	47673081	0.000000	0.000000	0.000000	0.000000
+chr22	47673081	47924600	0.000000	0.000000	0.000000	0.000000
+chr22	47924600	47924902	0.000000	0.000000	0.000000	0.000000
+chr22	47924902	47987180	0.000000	0.000000	0.000000	0.000000
+chr22	47987180	47987505	0.000000	0.000000	0.000000	0.000000
+chr22	47987505	48020580	0.000000	0.000000	0.000000	0.000000
+chr22	48020580	48020954	0.000000	0.000000	0.000000	0.000000
+chr22	48020954	48042565	0.000000	0.000000	0.000000	0.000000
+chr22	48042565	48042922	0.000000	0.000000	0.000000	0.000000
+chr22	48042922	48227644	0.000000	0.000000	0.000000	0.000000
+chr22	48227644	48228004	0.000000	0.000000	0.000000	0.000000
+chr22	48228004	48307175	0.000000	0.000000	0.000000	0.000000
+chr22	48307175	48307455	0.000000	0.000000	0.000000	0.000000
+chr22	48307455	48479899	0.000000	0.000000	0.000000	0.000000
+chr22	48479899	48480140	28.826399	28.826399	55.526501	49.916557	*
+chr22	48480140	48493138	0.000000	0.000000	0.000000	0.000000
+chr22	48493138	48493460	0.000000	0.000000	0.000000	0.000000
+chr22	48493460	48504405	0.000000	0.000000	0.000000	0.000000
+chr22	48504405	48504629	28.826399	28.826399	55.526501	49.916557	*
+chr22	48504629	48565208	0.000000	0.000000	0.000000	0.000000
+chr22	48565208	48565487	0.000000	0.000000	0.000000	0.000000
+chr22	48565487	48578160	0.000000	0.000000	0.000000	0.000000
+chr22	48578160	48578448	0.000000	0.000000	0.000000	0.000000
+chr22	48578448	48625177	0.000000	0.000000	0.000000	0.000000
+chr22	48625177	48625522	0.000000	0.000000	0.000000	0.000000
+chr22	48625522	48840344	0.000000	0.000000	0.000000	0.000000
+chr22	48840344	48840641	0.000000	0.000000	0.000000	0.000000
+chr22	48840641	48957410	0.000000	0.000000	0.000000	0.000000
+chr22	48957410	48957651	0.000000	0.000000	0.000000	0.000000
+chr22	48957651	48967117	0.000000	0.000000	0.000000	0.000000
+chr22	48967117	48967481	0.000000	0.000000	0.000000	0.000000
+chr22	48967481	49401594	0.000000	0.000000	0.000000	0.000000
+chr22	49401594	49401921	28.826399	28.826399	55.526501	49.916557	*
+chr22	49401921	49553435	0.000000	0.000000	0.000000	0.000000
+chr22	49553435	49553624	28.826399	28.826399	55.526501	49.916557	*
+chr22	49553624	49746583	0.000000	0.000000	0.000000	0.000000
+chr22	49746583	49746773	28.826399	28.826399	55.526501	49.916557	*
+chr22	49746773	49988586	0.000000	0.000000	0.000000	0.000000
+chr22	49988586	49988885	0.000000	0.000000	0.000000	0.000000
+chr22	49988885	50049313	0.000000	0.000000	0.000000	0.000000
+chr22	50049313	50049602	0.000000	0.000000	0.000000	0.000000
+chr22	50049602	50059030	0.000000	0.000000	0.000000	0.000000
+chr22	50059030	50059315	0.000000	0.000000	0.000000	0.000000
+chr22	50059315	50125688	0.000000	0.000000	0.000000	0.000000
+chr22	50125688	50125865	0.000000	0.000000	0.000000	0.000000
+chr22	50125865	50214174	0.000000	0.000000	0.000000	0.000000
+chr22	50214174	50214574	0.000000	0.000000	0.000000	0.000000
+chr22	50214574	50233496	0.000000	0.000000	0.000000	0.000000
+chr22	50233496	50233928	0.000000	0.000000	0.000000	0.000000
+chr22	50233928	50234415	0.000000	0.000000	0.000000	0.000000
+chr22	50234415	50234797	0.000000	0.000000	0.000000	0.000000
+chr22	50234797	50338193	0.000000	0.000000	0.000000	0.000000
+chr22	50338193	50338471	0.000000	0.000000	0.000000	0.000000
+chr22	50338471	50354362	0.000000	0.000000	0.000000	0.000000
+chr22	50354362	50354742	0.000000	0.000000	0.000000	0.000000
+chr22	50354742	50418074	0.000000	0.000000	0.000000	0.000000
+chr22	50418074	50418305	28.826399	28.826399	55.526501	49.916557	*
+chr22	50418305	50451024	0.000000	0.000000	0.000000	0.000000
+chr22	50451024	50451324	0.000000	0.000000	0.000000	0.000000
+chr22	50451324	50468615	0.000000	0.000000	0.000000	0.000000
+chr22	50468615	50468733	28.826399	28.826399	55.526501	49.916557	*
+chr22	50468733	50468871	32.549095	32.549095	62.919518	56.241673	*
+chr22	50468871	50468928	28.826399	28.826399	55.526501	49.916557	*
+chr22	50468928	50472607	0.000000	0.000000	0.000000	0.000000
+chr22	50472607	50472929	0.000000	0.000000	0.000000	0.000000
+chr22	50472929	50512931	0.000000	0.000000	0.000000	0.000000
+chr22	50512931	50513121	28.826399	28.826399	55.526501	49.916557	*
+chr22	50513121	50574751	0.000000	0.000000	0.000000	0.000000
+chr22	50574751	50575063	0.000000	0.000000	0.000000	0.000000
+chr22	50575063	50628501	0.000000	0.000000	0.000000	0.000000
+chr22	50628501	50628741	28.826399	28.826399	55.526501	49.916557	*
+chr22	50628741	50630995	0.000000	0.000000	0.000000	0.000000
+chr22	50630995	50631224	28.826399	28.826399	55.526501	49.916557	*
+chr22	50631224	50645170	0.000000	0.000000	0.000000	0.000000
+chr22	50645170	50645459	28.826399	28.826399	55.526501	49.916557	*
+chr22	50645459	50658290	0.000000	0.000000	0.000000	0.000000
+chr22	50658290	50658656	0.000000	0.000000	0.000000	0.000000
+chr22	50658656	50716298	0.000000	0.000000	0.000000	0.000000
+chr22	50716298	50716549	28.826399	28.826399	55.526501	49.916557	*
+chr22	50716549	50728249	0.000000	0.000000	0.000000	0.000000
+chr22	50728249	50728594	0.000000	0.000000	0.000000	0.000000
+chr22	50728594	50757826	0.000000	0.000000	0.000000	0.000000
+chr22	50757826	50758150	0.000000	0.000000	0.000000	0.000000
+chr22	50758150	50769460	0.000000	0.000000	0.000000	0.000000
+chr22	50769460	50769676	28.826399	28.826399	55.526501	49.916557	*
+chr22	50769676	50802506	0.000000	0.000000	0.000000	0.000000
+chr22	50802506	50802827	0.000000	0.000000	0.000000	0.000000
+chr22	50802827	50911511	0.000000	0.000000	0.000000	0.000000
+chr22	50911511	50911831	28.826399	28.826399	55.526501	49.916557	*
+chr22	50911831	50936751	0.000000	0.000000	0.000000	0.000000
+chr22	50936751	50936936	28.826399	28.826399	55.526501	49.916557	*
+chr22	50936936	50965071	0.000000	0.000000	0.000000	0.000000
+chr22	50965071	50965340	28.826399	28.826399	55.526501	49.916557	*
+chr22	50965340	50972925	0.000000	0.000000	0.000000	0.000000
+chr22	50972925	50973062	28.826399	28.826399	55.526501	49.916557	*
+chr22	50973062	50982866	0.000000	0.000000	0.000000	0.000000
+chr22	50982866	50983075	28.826399	28.826399	55.526501	49.916557	*
+chr22	50983075	51058888	0.000000	0.000000	0.000000	0.000000
+chr22	51058888	51059217	28.826399	28.826399	55.526501	49.916557	*
+chr22	51059217	51066506	0.000000	0.000000	0.000000	0.000000
+chr22	51066506	51066791	28.826399	28.826399	55.526501	49.916557	*
+chr22	51066791	51102143	0.000000	0.000000	0.000000	0.000000
+chr22	51102143	51102471	0.000000	0.000000	0.000000	0.000000
+chr22	51102471	51103700	0.000000	0.000000	0.000000	0.000000
+chr22	51103700	51104012	0.000000	0.000000	0.000000	0.000000
+chr22	51104012	51130088	0.000000	0.000000	0.000000	0.000000
+chr22	51130088	51130096	28.826399	28.826399	55.526501	49.916557	*
+chr22	51130096	51130313	32.549095	32.549095	62.919518	56.241673	*
+chr22	51130313	51130412	28.826399	28.826399	55.526501	49.916557	*
+chr22	51130412	51208525	0.000000	0.000000	0.000000	0.000000
+chr22	51208525	51208735	0.000000	0.000000	0.000000	0.000000
+chr22	51208735	51213606	0.000000	0.000000	0.000000	0.000000
+chr22	51213606	51213856	28.826399	28.826399	55.526501	49.916557	*
+chr22	51213856	51304566	0.000000	0.000000	0.000000	0.000000
+chrX	0	155270560	0.000000	0.000000	0.000000	0.000000
+chrY	0	59373566	0.000000	0.000000	0.000000	0.000000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/Pool2.bedgraph	Thu Aug 29 10:42:38 2019 -0400
@@ -0,0 +1,3872 @@
+# experimental file: CTCF_PE_ChIP_chr22.bam; control file: CTCF_PE_CTRL_chr22.bam
+chr	start	end	experimental	control	-log(p)
+chr1	0	249250621	0.000000	0.000039	0.000000
+chr2	0	243199373	0.000000	0.000039	0.000000
+chr3	0	198022430	0.000000	0.000039	0.000000
+chr4	0	191154276	0.000000	0.000039	0.000000
+chr5	0	180915260	0.000000	0.000039	0.000000
+chr6	0	171115067	0.000000	0.000039	0.000000
+chr7	0	159138663	0.000000	0.000039	0.000000
+chr8	0	146364022	0.000000	0.000039	0.000000
+chr9	0	141213431	0.000000	0.000039	0.000000
+chr10	0	135534747	0.000000	0.000039	0.000000
+chr11	0	135006516	0.000000	0.000039	0.000000
+chr12	0	133851895	0.000000	0.000039	0.000000
+chr13	0	115169878	0.000000	0.000039	0.000000
+chr14	0	107349540	0.000000	0.000039	0.000000
+chr15	0	102531392	0.000000	0.000039	0.000000
+chr16	0	90354753	0.000000	0.000039	0.000000
+chr17	0	81195210	0.000000	0.000039	0.000000
+chr18	0	78077248	0.000000	0.000039	0.000000
+chr19	0	59128983	0.000000	0.000039	0.000000
+chr20	0	63025520	0.000000	0.000039	0.000000
+chr21	0	48129895	0.000000	0.000039	0.000000
+chr22	0	16874913	0.000000	0.000039	0.000000
+chr22	16874913	16875110	1.000000	0.000039	28.826399
+chr22	16875110	17213301	0.000000	0.000039	0.000000
+chr22	17213301	17213528	0.000000	0.793817	0.000000
+chr22	17213528	17305939	0.000000	0.000039	0.000000
+chr22	17305939	17306331	0.000000	0.793817	0.000000
+chr22	17306331	17331220	0.000000	0.000039	0.000000
+chr22	17331220	17331528	0.000000	0.793817	0.000000
+chr22	17331528	17333158	0.000000	0.000039	0.000000
+chr22	17333158	17333474	0.000000	0.793817	0.000000
+chr22	17333474	17374212	0.000000	0.000039	0.000000
+chr22	17374212	17374535	0.000000	0.793817	0.000000
+chr22	17374535	17377196	0.000000	0.000039	0.000000
+chr22	17377196	17377428	1.000000	0.000039	28.826399
+chr22	17377428	17529435	0.000000	0.000039	0.000000
+chr22	17529435	17529809	0.000000	0.793817	0.000000
+chr22	17529809	17555930	0.000000	0.000039	0.000000
+chr22	17555930	17556245	1.000000	0.000039	28.826399
+chr22	17556245	17574927	0.000000	0.000039	0.000000
+chr22	17574927	17575208	0.000000	0.793817	0.000000
+chr22	17575208	17652822	0.000000	0.000039	0.000000
+chr22	17652822	17652841	1.000000	0.000039	28.826399
+chr22	17652841	17653093	2.000000	0.000039	32.549095
+chr22	17653093	17653159	1.000000	0.000039	28.826399
+chr22	17653159	17686483	0.000000	0.000039	0.000000
+chr22	17686483	17686744	1.000000	0.000039	28.826399
+chr22	17686744	17697561	0.000000	0.000039	0.000000
+chr22	17697561	17697877	0.000000	0.793817	0.000000
+chr22	17697877	17718259	0.000000	0.000039	0.000000
+chr22	17718259	17718522	1.000000	0.000039	28.826399
+chr22	17718522	17836468	0.000000	0.000039	0.000000
+chr22	17836468	17836780	1.000000	0.000039	28.826399
+chr22	17836780	17847348	0.000000	0.000039	0.000000
+chr22	17847348	17847549	1.000000	0.000039	28.826399
+chr22	17847549	17979862	0.000000	0.000039	0.000000
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+chr22	48020580	48020954	0.000000	0.793817	0.000000
+chr22	48020954	48042565	0.000000	0.000039	0.000000
+chr22	48042565	48042922	0.000000	0.793817	0.000000
+chr22	48042922	48227644	0.000000	0.000039	0.000000
+chr22	48227644	48228004	0.000000	0.793817	0.000000
+chr22	48228004	48307175	0.000000	0.000039	0.000000
+chr22	48307175	48307455	0.000000	0.793817	0.000000
+chr22	48307455	48479899	0.000000	0.000039	0.000000
+chr22	48479899	48480140	1.000000	0.000039	28.826399
+chr22	48480140	48493138	0.000000	0.000039	0.000000
+chr22	48493138	48493460	0.000000	0.793817	0.000000
+chr22	48493460	48504405	0.000000	0.000039	0.000000
+chr22	48504405	48504629	1.000000	0.000039	28.826399
+chr22	48504629	48565208	0.000000	0.000039	0.000000
+chr22	48565208	48565487	0.000000	0.793817	0.000000
+chr22	48565487	48578160	0.000000	0.000039	0.000000
+chr22	48578160	48578448	0.000000	0.793817	0.000000
+chr22	48578448	48625177	0.000000	0.000039	0.000000
+chr22	48625177	48625522	0.000000	0.793817	0.000000
+chr22	48625522	48840344	0.000000	0.000039	0.000000
+chr22	48840344	48840641	0.000000	0.793817	0.000000
+chr22	48840641	48957410	0.000000	0.000039	0.000000
+chr22	48957410	48957651	0.000000	0.793817	0.000000
+chr22	48957651	48967117	0.000000	0.000039	0.000000
+chr22	48967117	48967481	0.000000	0.793817	0.000000
+chr22	48967481	49401594	0.000000	0.000039	0.000000
+chr22	49401594	49401921	1.000000	0.000039	28.826399
+chr22	49401921	49553435	0.000000	0.000039	0.000000
+chr22	49553435	49553624	1.000000	0.000039	28.826399
+chr22	49553624	49746583	0.000000	0.000039	0.000000
+chr22	49746583	49746773	1.000000	0.000039	28.826399
+chr22	49746773	49988586	0.000000	0.000039	0.000000
+chr22	49988586	49988885	0.000000	0.793817	0.000000
+chr22	49988885	50049313	0.000000	0.000039	0.000000
+chr22	50049313	50049602	0.000000	0.793817	0.000000
+chr22	50049602	50059030	0.000000	0.000039	0.000000
+chr22	50059030	50059315	0.000000	0.793817	0.000000
+chr22	50059315	50125688	0.000000	0.000039	0.000000
+chr22	50125688	50125865	0.000000	0.793817	0.000000
+chr22	50125865	50214174	0.000000	0.000039	0.000000
+chr22	50214174	50214574	0.000000	0.793817	0.000000
+chr22	50214574	50233496	0.000000	0.000039	0.000000
+chr22	50233496	50233928	0.000000	0.793817	0.000000
+chr22	50233928	50234415	0.000000	0.000039	0.000000
+chr22	50234415	50234797	0.000000	0.793817	0.000000
+chr22	50234797	50338193	0.000000	0.000039	0.000000
+chr22	50338193	50338471	0.000000	0.793817	0.000000
+chr22	50338471	50354362	0.000000	0.000039	0.000000
+chr22	50354362	50354742	0.000000	0.793817	0.000000
+chr22	50354742	50418074	0.000000	0.000039	0.000000
+chr22	50418074	50418305	1.000000	0.000039	28.826399
+chr22	50418305	50451024	0.000000	0.000039	0.000000
+chr22	50451024	50451324	0.000000	0.793817	0.000000
+chr22	50451324	50468615	0.000000	0.000039	0.000000
+chr22	50468615	50468733	1.000000	0.000039	28.826399
+chr22	50468733	50468871	2.000000	0.000039	32.549095
+chr22	50468871	50468928	1.000000	0.000039	28.826399
+chr22	50468928	50472607	0.000000	0.000039	0.000000
+chr22	50472607	50472929	0.000000	0.793817	0.000000
+chr22	50472929	50512931	0.000000	0.000039	0.000000
+chr22	50512931	50513121	1.000000	0.000039	28.826399
+chr22	50513121	50574751	0.000000	0.000039	0.000000
+chr22	50574751	50575063	0.000000	0.793817	0.000000
+chr22	50575063	50628501	0.000000	0.000039	0.000000
+chr22	50628501	50628741	1.000000	0.000039	28.826399
+chr22	50628741	50630995	0.000000	0.000039	0.000000
+chr22	50630995	50631224	1.000000	0.000039	28.826399
+chr22	50631224	50645170	0.000000	0.000039	0.000000
+chr22	50645170	50645459	1.000000	0.000039	28.826399
+chr22	50645459	50658290	0.000000	0.000039	0.000000
+chr22	50658290	50658656	0.000000	0.793817	0.000000
+chr22	50658656	50716298	0.000000	0.000039	0.000000
+chr22	50716298	50716549	1.000000	0.000039	28.826399
+chr22	50716549	50728249	0.000000	0.000039	0.000000
+chr22	50728249	50728594	0.000000	0.793817	0.000000
+chr22	50728594	50757826	0.000000	0.000039	0.000000
+chr22	50757826	50758150	0.000000	0.793817	0.000000
+chr22	50758150	50769460	0.000000	0.000039	0.000000
+chr22	50769460	50769676	1.000000	0.000039	28.826399
+chr22	50769676	50802506	0.000000	0.000039	0.000000
+chr22	50802506	50802827	0.000000	0.793817	0.000000
+chr22	50802827	50911511	0.000000	0.000039	0.000000
+chr22	50911511	50911831	1.000000	0.000039	28.826399
+chr22	50911831	50936751	0.000000	0.000039	0.000000
+chr22	50936751	50936936	1.000000	0.000039	28.826399
+chr22	50936936	50965071	0.000000	0.000039	0.000000
+chr22	50965071	50965340	1.000000	0.000039	28.826399
+chr22	50965340	50972925	0.000000	0.000039	0.000000
+chr22	50972925	50973062	1.000000	0.000039	28.826399
+chr22	50973062	50982866	0.000000	0.000039	0.000000
+chr22	50982866	50983075	1.000000	0.000039	28.826399
+chr22	50983075	51058888	0.000000	0.000039	0.000000
+chr22	51058888	51059217	1.000000	0.000039	28.826399
+chr22	51059217	51066506	0.000000	0.000039	0.000000
+chr22	51066506	51066791	1.000000	0.000039	28.826399
+chr22	51066791	51102143	0.000000	0.000039	0.000000
+chr22	51102143	51102471	0.000000	0.793817	0.000000
+chr22	51102471	51103700	0.000000	0.000039	0.000000
+chr22	51103700	51104012	0.000000	0.793817	0.000000
+chr22	51104012	51130088	0.000000	0.000039	0.000000
+chr22	51130088	51130096	1.000000	0.000039	28.826399
+chr22	51130096	51130313	2.000000	0.000039	32.549095
+chr22	51130313	51130412	1.000000	0.000039	28.826399
+chr22	51130412	51208525	0.000000	0.000039	0.000000
+chr22	51208525	51208735	0.000000	0.793817	0.000000
+chr22	51208735	51213606	0.000000	0.000039	0.000000
+chr22	51213606	51213856	1.000000	0.000039	28.826399
+chr22	51213856	51304566	0.000000	0.000039	0.000000
+chrX	0	155270560	0.000000	0.000039	0.000000
+chrY	0	59373566	0.000000	0.000039	0.000000
+# experimental file: CTCF_PE_ChIP_chr22.bam; control file: CTCF_PE_CTRL_chr22.bam
+chr	start	end	experimental	control	-log(p)
+chr1	0	249250621	0.000000	0.000039	0.000000
+chr2	0	243199373	0.000000	0.000039	0.000000
+chr3	0	198022430	0.000000	0.000039	0.000000
+chr4	0	191154276	0.000000	0.000039	0.000000
+chr5	0	180915260	0.000000	0.000039	0.000000
+chr6	0	171115067	0.000000	0.000039	0.000000
+chr7	0	159138663	0.000000	0.000039	0.000000
+chr8	0	146364022	0.000000	0.000039	0.000000
+chr9	0	141213431	0.000000	0.000039	0.000000
+chr10	0	135534747	0.000000	0.000039	0.000000
+chr11	0	135006516	0.000000	0.000039	0.000000
+chr12	0	133851895	0.000000	0.000039	0.000000
+chr13	0	115169878	0.000000	0.000039	0.000000
+chr14	0	107349540	0.000000	0.000039	0.000000
+chr15	0	102531392	0.000000	0.000039	0.000000
+chr16	0	90354753	0.000000	0.000039	0.000000
+chr17	0	81195210	0.000000	0.000039	0.000000
+chr18	0	78077248	0.000000	0.000039	0.000000
+chr19	0	59128983	0.000000	0.000039	0.000000
+chr20	0	63025520	0.000000	0.000039	0.000000
+chr21	0	48129895	0.000000	0.000039	0.000000
+chr22	0	16874913	0.000000	0.000039	0.000000
+chr22	16874913	16875110	1.000000	0.000039	28.826399
+chr22	16875110	17213301	0.000000	0.000039	0.000000
+chr22	17213301	17213528	0.000000	0.793817	0.000000
+chr22	17213528	17305939	0.000000	0.000039	0.000000
+chr22	17305939	17306331	0.000000	0.793817	0.000000
+chr22	17306331	17331220	0.000000	0.000039	0.000000
+chr22	17331220	17331528	0.000000	0.793817	0.000000
+chr22	17331528	17333158	0.000000	0.000039	0.000000
+chr22	17333158	17333474	0.000000	0.793817	0.000000
+chr22	17333474	17374212	0.000000	0.000039	0.000000
+chr22	17374212	17374535	0.000000	0.793817	0.000000
+chr22	17374535	17377196	0.000000	0.000039	0.000000
+chr22	17377196	17377428	1.000000	0.000039	28.826399
+chr22	17377428	17529435	0.000000	0.000039	0.000000
+chr22	17529435	17529809	0.000000	0.793817	0.000000
+chr22	17529809	17555930	0.000000	0.000039	0.000000
+chr22	17555930	17556245	1.000000	0.000039	28.826399
+chr22	17556245	17574927	0.000000	0.000039	0.000000
+chr22	17574927	17575208	0.000000	0.793817	0.000000
+chr22	17575208	17652822	0.000000	0.000039	0.000000
+chr22	17652822	17652841	1.000000	0.000039	28.826399
+chr22	17652841	17653093	2.000000	0.000039	32.549095
+chr22	17653093	17653159	1.000000	0.000039	28.826399
+chr22	17653159	17686483	0.000000	0.000039	0.000000
+chr22	17686483	17686744	1.000000	0.000039	28.826399
+chr22	17686744	17697561	0.000000	0.000039	0.000000
+chr22	17697561	17697877	0.000000	0.793817	0.000000
+chr22	17697877	17718259	0.000000	0.000039	0.000000
+chr22	17718259	17718522	1.000000	0.000039	28.826399
+chr22	17718522	17836468	0.000000	0.000039	0.000000
+chr22	17836468	17836780	1.000000	0.000039	28.826399
+chr22	17836780	17847348	0.000000	0.000039	0.000000
+chr22	17847348	17847549	1.000000	0.000039	28.826399
+chr22	17847549	17979862	0.000000	0.000039	0.000000
+chr22	17979862	17980115	1.000000	0.000039	28.826399
+chr22	17980115	17999764	0.000000	0.000039	0.000000
+chr22	17999764	17999976	1.000000	0.000039	28.826399
+chr22	17999976	18137643	0.000000	0.000039	0.000000
+chr22	18137643	18137939	0.000000	0.793817	0.000000
+chr22	18137939	18141593	0.000000	0.000039	0.000000
+chr22	18141593	18141906	0.000000	0.793817	0.000000
+chr22	18141906	18178995	0.000000	0.000039	0.000000
+chr22	18178995	18179198	1.000000	0.000039	28.826399
+chr22	18179198	18201532	0.000000	0.000039	0.000000
+chr22	18201532	18201830	0.000000	0.793817	0.000000
+chr22	18201830	18225329	0.000000	0.000039	0.000000
+chr22	18225329	18225542	1.000000	0.000039	28.826399
+chr22	18225542	18259249	0.000000	0.000039	0.000000
+chr22	18259249	18259606	0.000000	0.793817	0.000000
+chr22	18259606	18263815	0.000000	0.000039	0.000000
+chr22	18263815	18264099	0.000000	0.793817	0.000000
+chr22	18264099	18267916	0.000000	0.000039	0.000000
+chr22	18267916	18268161	1.000000	0.000039	28.826399
+chr22	18268161	18281979	0.000000	0.000039	0.000000
+chr22	18281979	18282182	1.000000	0.000039	28.826399
+chr22	18282182	18379432	0.000000	0.000039	0.000000
+chr22	18379432	18379662	1.000000	0.000039	28.826399
+chr22	18379662	18394708	0.000000	0.000039	0.000000
+chr22	18394708	18395062	0.000000	0.793817	0.000000
+chr22	18395062	18479380	0.000000	0.000039	0.000000
+chr22	18479380	18479646	0.000000	0.793817	0.000000
+chr22	18479646	18481466	0.000000	0.000039	0.000000
+chr22	18481466	18481819	0.000000	0.793817	0.000000
+chr22	18481819	18533080	0.000000	0.000039	0.000000
+chr22	18533080	18533303	0.000000	0.793817	0.000000
+chr22	18533303	18547463	0.000000	0.000039	0.000000
+chr22	18547463	18547814	0.000000	0.793817	0.000000
+chr22	18547814	18548727	0.000000	0.000039	0.000000
+chr22	18548727	18548914	1.000000	0.000039	28.826399
+chr22	18548914	18558818	0.000000	0.000039	0.000000
+chr22	18558818	18558964	1.000000	0.000039	28.826399
+chr22	18558964	18559099	2.000000	0.000039	32.549095
+chr22	18559099	18559167	1.000000	0.000039	28.826399
+chr22	18559167	18559279	0.000000	0.000039	0.000000
+chr22	18559279	18559477	1.000000	0.000039	28.826399
+chr22	18559477	18566281	0.000000	0.000039	0.000000
+chr22	18566281	18566568	0.000000	0.793817	0.000000
+chr22	18566568	18588889	0.000000	0.000039	0.000000
+chr22	18588889	18589127	1.000000	0.000039	28.826399
+chr22	18589127	18632607	0.000000	0.000039	0.000000
+chr22	18632607	18632823	1.000000	0.000039	28.826399
+chr22	18632823	18633120	0.000000	0.000039	0.000000
+chr22	18633120	18633461	0.000000	0.793817	0.000000
+chr22	18633461	18847100	0.000000	0.000039	0.000000
+chr22	18847100	18847283	0.000000	0.793817	0.000000
+chr22	18847283	18941875	0.000000	0.000039	0.000000
+chr22	18941875	18942127	1.000000	0.000039	28.826399
+chr22	18942127	18979364	0.000000	0.000039	0.000000
+chr22	18979364	18979617	1.000000	0.000039	28.826399
+chr22	18979617	19072523	0.000000	0.000039	0.000000
+chr22	19072523	19072736	1.000000	0.000039	28.826399
+chr22	19072736	19073753	0.000000	0.000039	0.000000
+chr22	19073753	19074058	1.000000	0.000039	28.826399
+chr22	19074058	19107255	0.000000	0.000039	0.000000
+chr22	19107255	19107575	0.000000	0.793817	0.000000
+chr22	19107575	19157356	0.000000	0.000039	0.000000
+chr22	19157356	19157690	0.000000	0.793817	0.000000
+chr22	19157690	19166731	0.000000	0.000039	0.000000
+chr22	19166731	19167005	1.000000	0.000039	28.826399
+chr22	19167005	19186862	0.000000	0.000039	0.000000
+chr22	19186862	19187126	0.000000	0.793817	0.000000
+chr22	19187126	19238441	0.000000	0.000039	0.000000
+chr22	19238441	19238808	0.000000	0.793817	0.000000
+chr22	19238808	19307238	0.000000	0.000039	0.000000
+chr22	19307238	19307559	0.000000	0.793817	0.000000
+chr22	19307559	19360117	0.000000	0.000039	0.000000
+chr22	19360117	19360433	0.000000	0.793817	0.000000
+chr22	19360433	19418849	0.000000	0.000039	0.000000
+chr22	19418849	19419230	0.000000	0.793817	0.000000
+chr22	19419230	19465378	0.000000	0.000039	0.000000
+chr22	19465378	19465462	1.000000	0.000039	28.826399
+chr22	19465462	19465618	1.000000	0.793817	0.625661
+chr22	19465618	19465807	0.000000	0.793817	0.000000
+chr22	19465807	19541960	0.000000	0.000039	0.000000
+chr22	19541960	19542242	0.000000	0.793817	0.000000
+chr22	19542242	19555413	0.000000	0.000039	0.000000
+chr22	19555413	19555614	1.000000	0.000039	28.826399
+chr22	19555614	19617529	0.000000	0.000039	0.000000
+chr22	19617529	19617717	1.000000	0.000039	28.826399
+chr22	19617717	19630508	0.000000	0.000039	0.000000
+chr22	19630508	19630805	0.000000	0.793817	0.000000
+chr22	19630805	19667222	0.000000	0.000039	0.000000
+chr22	19667222	19667453	1.000000	0.000039	28.826399
+chr22	19667453	19717760	0.000000	0.000039	0.000000
+chr22	19717760	19718074	0.000000	0.793817	0.000000
+chr22	19718074	19822260	0.000000	0.000039	0.000000
+chr22	19822260	19822541	1.000000	0.000039	28.826399
+chr22	19822541	19851095	0.000000	0.000039	0.000000
+chr22	19851095	19851363	0.000000	0.793817	0.000000
+chr22	19851363	19853028	0.000000	0.000039	0.000000
+chr22	19853028	19853375	0.000000	0.793817	0.000000
+chr22	19853375	19935205	0.000000	0.000039	0.000000
+chr22	19935205	19935418	1.000000	0.000039	28.826399
+chr22	19935418	19936838	0.000000	0.000039	0.000000
+chr22	19936838	19937122	0.000000	0.793817	0.000000
+chr22	19937122	19941405	0.000000	0.000039	0.000000
+chr22	19941405	19941602	1.000000	0.000039	28.826399
+chr22	19941602	19983826	0.000000	0.000039	0.000000
+chr22	19983826	19984010	1.000000	0.000039	28.826399
+chr22	19984010	20001011	0.000000	0.000039	0.000000
+chr22	20001011	20001314	1.000000	0.000039	28.826399
+chr22	20001314	20023670	0.000000	0.000039	0.000000
+chr22	20023670	20023900	0.000000	0.793817	0.000000
+chr22	20023900	20028009	0.000000	0.000039	0.000000
+chr22	20028009	20028299	1.000000	0.000039	28.826399
+chr22	20028299	20129148	0.000000	0.000039	0.000000
+chr22	20129148	20129431	0.000000	0.793817	0.000000
+chr22	20129431	20133400	0.000000	0.000039	0.000000
+chr22	20133400	20133683	0.000000	0.793817	0.000000
+chr22	20133683	20140455	0.000000	0.000039	0.000000
+chr22	20140455	20140677	0.000000	0.793817	0.000000
+chr22	20140677	20141306	0.000000	0.000039	0.000000
+chr22	20141306	20141540	1.000000	0.000039	28.826399
+chr22	20141540	20144441	0.000000	0.000039	0.000000
+chr22	20144441	20144633	1.000000	0.000039	28.826399
+chr22	20144633	20144743	2.000000	0.000039	32.549095
+chr22	20144743	20144859	1.000000	0.000039	28.826399
+chr22	20144859	20239857	0.000000	0.000039	0.000000
+chr22	20239857	20240176	0.000000	0.793817	0.000000
+chr22	20240176	20256351	0.000000	0.000039	0.000000
+chr22	20256351	20256652	1.000000	0.000039	28.826399
+chr22	20256652	20278392	0.000000	0.000039	0.000000
+chr22	20278392	20278691	0.000000	0.793817	0.000000
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