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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit 1471c6728550f057b36d5bb1f54df4a8fb5236a4
author iuc
date Wed, 23 Jul 2025 12:22:13 +0000
parents f99dd58de04f
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f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
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1 # gffcompare v0.12.6 | Command line was:
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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2 #gffcompare -V -r reference_annotation -R --strict-match -e 100 -T -d 100 -p TCONS gffcompare_in4_gtf
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2bb86e2c417f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
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3 #
2bb86e2c417f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
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2bb86e2c417f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
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5 #= Summary for dataset: gffcompare_in4_gtf
2bb86e2c417f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
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6 # Query mRNAs : 35 in 29 loci (15 multi-exon transcripts)
2bb86e2c417f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
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7 # (3 multi-transcript loci, ~1.2 transcripts per locus)
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f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
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8 # Reference mRNAs : 35 in 29 loci (15 multi-exon)
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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9 # Super-loci w/ reference transcripts: 29
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2bb86e2c417f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
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10 #-----------------| Sensitivity | Precision |
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f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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11 Base level: 100.0 | 100.0 |
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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12 Exon level: 100.0 | 100.0 |
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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13 Intron level: 100.0 | 100.0 |
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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14 Intron chain level: 100.0 | 100.0 |
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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15 Transcript level: 100.0 | 100.0 |
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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16 Locus level: 100.0 | 100.0 |
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2bb86e2c417f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
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f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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18 Matching intron chains: 15
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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19 Matching transcripts: 35
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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20 Matching loci: 29
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2bb86e2c417f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
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f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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22 Missed exons: 0/122 ( 0.0%)
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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23 Novel exons: 0/122 ( 0.0%)
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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24 Missed introns: 0/87 ( 0.0%)
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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25 Novel introns: 0/87 ( 0.0%)
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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26 Missed loci: 0/29 ( 0.0%)
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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27 Novel loci: 0/29 ( 0.0%)
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2bb86e2c417f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
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f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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29 Total union super-loci across all input datasets: 29
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2bb86e2c417f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
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30 35 out of 35 consensus transcripts written in gffcmp.annotated.gtf (0 discarded as redundant)