Mercurial > repos > iuc > gffcompare

annotate test-data/gffcompare_out3.stats @ 5:f99dd58de04f draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
author iuc
date Fri, 03 Feb 2023 10:57:30 +0000
parents 0f710191a66d
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
5
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
parents: 4
diff changeset
1 # gffcompare v0.12.6 | Command line was:
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
parents: 4
diff changeset
2 #gffcompare -V -r reference_annotation -R --strict-match -e 100 -T -d 100 -p TCONS gffcompare_in4_gtf
3
2bb86e2c417f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents:
diff changeset
3 #
2bb86e2c417f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents:
diff changeset
4
2bb86e2c417f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents:
diff changeset
5 #= Summary for dataset: gffcompare_in4_gtf
2bb86e2c417f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents:
diff changeset
6 # Query mRNAs : 35 in 29 loci (15 multi-exon transcripts)
2bb86e2c417f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents:
diff changeset
7 # (3 multi-transcript loci, ~1.2 transcripts per locus)
5
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
parents: 4
diff changeset
8 # Reference mRNAs : 35 in 29 loci (15 multi-exon)
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
parents: 4
diff changeset
9 # Super-loci w/ reference transcripts: 29
3
2bb86e2c417f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents:
diff changeset
10 #-----------------| Sensitivity | Precision |
5
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
parents: 4
diff changeset
11 Base level: 100.0 | 100.0 |
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
parents: 4
diff changeset
12 Exon level: 100.0 | 100.0 |
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
parents: 4
diff changeset
13 Intron level: 100.0 | 100.0 |
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
parents: 4
diff changeset
14 Intron chain level: 100.0 | 100.0 |
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
parents: 4
diff changeset
15 Transcript level: 100.0 | 100.0 |
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
parents: 4
diff changeset
16 Locus level: 100.0 | 100.0 |
3
2bb86e2c417f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents:
diff changeset
17
5
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
parents: 4
diff changeset
18 Matching intron chains: 15
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
parents: 4
diff changeset
19 Matching transcripts: 35
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
parents: 4
diff changeset
20 Matching loci: 29
3
2bb86e2c417f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents:
diff changeset
21
5
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
parents: 4
diff changeset
22 Missed exons: 0/122 ( 0.0%)
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
parents: 4
diff changeset
23 Novel exons: 0/122 ( 0.0%)
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
parents: 4
diff changeset
24 Missed introns: 0/87 ( 0.0%)
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
parents: 4
diff changeset
25 Novel introns: 0/87 ( 0.0%)
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
parents: 4
diff changeset
26 Missed loci: 0/29 ( 0.0%)
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
parents: 4
diff changeset
27 Novel loci: 0/29 ( 0.0%)
3
2bb86e2c417f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents:
diff changeset
28
5
f99dd58de04f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
parents: 4
diff changeset
29 Total union super-loci across all input datasets: 29
3
2bb86e2c417f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents:
diff changeset
30 35 out of 35 consensus transcripts written in gffcmp.annotated.gtf (0 discarded as redundant)