Mercurial > repos > iuc > gffcompare
comparison test-data/gffcompare_out3.stats @ 3:2bb86e2c417f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
| author | iuc |
|---|---|
| date | Mon, 27 May 2019 13:54:15 -0400 |
| parents | |
| children | 0f710191a66d |
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| 2:f99d7825a501 | 3:2bb86e2c417f |
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| 1 # gffcompare v0.10.6 | Command line was: | |
| 2 #gffcompare -r ref_annotation -R -T -e 100 -d 100 -p TCONS gffcompare_in4_gtf | |
| 3 # | |
| 4 | |
| 5 #= Summary for dataset: gffcompare_in4_gtf | |
| 6 # Query mRNAs : 35 in 29 loci (15 multi-exon transcripts) | |
| 7 # (3 multi-transcript loci, ~1.2 transcripts per locus) | |
| 8 # Reference mRNAs : 20 in 7 loci (19 multi-exon) | |
| 9 # Super-loci w/ reference transcripts: 6 | |
| 10 #-----------------| Sensitivity | Precision | | |
| 11 Base level: 72.6 | 60.7 | | |
| 12 Exon level: 80.0 | 55.7 | | |
| 13 Intron level: 81.2 | 64.4 | | |
| 14 Intron chain level: 10.5 | 13.3 | | |
| 15 Transcript level: 10.0 | 5.7 | | |
| 16 Locus level: 28.6 | 6.9 | | |
| 17 | |
| 18 Matching intron chains: 2 | |
| 19 Matching transcripts: 2 | |
| 20 Matching loci: 2 | |
| 21 | |
| 22 Missed exons: 3/85 ( 3.5%) | |
| 23 Novel exons: 46/122 ( 37.7%) | |
| 24 Missed introns: 11/69 ( 15.9%) | |
| 25 Novel introns: 28/87 ( 32.2%) | |
| 26 Missed loci: 0/7 ( 0.0%) | |
| 27 Novel loci: 15/29 ( 51.7%) | |
| 28 | |
| 29 Total union super-loci across all input datasets: 21 | |
| 30 35 out of 35 consensus transcripts written in gffcmp.annotated.gtf (0 discarded as redundant) |