Mercurial > repos > iuc > gffcompare
diff test-data/gffcompare_out1.gtf @ 3:2bb86e2c417f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
| author | iuc |
|---|---|
| date | Mon, 27 May 2019 13:54:15 -0400 |
| parents | f99d7825a501 |
| children | f99dd58de04f |
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--- a/test-data/gffcompare_out1.gtf Tue Feb 05 15:51:44 2019 -0500 +++ b/test-data/gffcompare_out1.gtf Mon May 27 13:54:15 2019 -0400 @@ -1,200 +1,16 @@ -chr1 Cufflinks transcript 3204755 3204833 . - . transcript_id "TCONS_00000001"; gene_id "XLOC_000001"; gene_name "Xkr4"; oId "CUFF.13.1"; cmp_ref "Xkr4"; class_code "c"; tss_id "TSS1"; -chr1 Cufflinks exon 3204755 3204833 . - . transcript_id "TCONS_00000001"; gene_id "XLOC_000001"; exon_number "1"; -chr1 Cufflinks transcript 3111450 3111490 . . . transcript_id "TCONS_00000002"; gene_id "XLOC_000002"; oId "CUFF.1.1"; class_code "u"; tss_id "TSS2"; -chr1 Cufflinks exon 3111450 3111490 . . . transcript_id "TCONS_00000002"; gene_id "XLOC_000002"; exon_number "1"; -chr1 Cufflinks transcript 3111546 3111576 . . . transcript_id "TCONS_00000003"; gene_id "XLOC_000003"; oId "CUFF.3.1"; class_code "u"; tss_id "TSS3"; -chr1 Cufflinks exon 3111546 3111576 . . . transcript_id "TCONS_00000003"; gene_id "XLOC_000003"; exon_number "1"; -chr1 Cufflinks transcript 3174766 3174792 . . . transcript_id "TCONS_00000051"; gene_id "XLOC_000004"; oId "CUFF.1.1"; class_code "u"; tss_id "TSS4"; -chr1 Cufflinks exon 3174766 3174792 . . . transcript_id "TCONS_00000051"; gene_id "XLOC_000004"; exon_number "1"; -chr1 Cufflinks transcript 3187402 3187428 . . . transcript_id "TCONS_00000052"; gene_id "XLOC_000005"; oId "CUFF.3.1"; class_code "u"; tss_id "TSS5"; -chr1 Cufflinks exon 3187402 3187428 . . . transcript_id "TCONS_00000052"; gene_id "XLOC_000005"; exon_number "1"; -chr1 Cufflinks transcript 3188522 3188548 . . . transcript_id "TCONS_00000053"; gene_id "XLOC_000006"; oId "CUFF.5.1"; class_code "u"; tss_id "TSS6"; -chr1 Cufflinks exon 3188522 3188548 . . . transcript_id "TCONS_00000053"; gene_id "XLOC_000006"; exon_number "1"; -chr1 Cufflinks transcript 3189811 3190789 . . . transcript_id "TCONS_00000054"; gene_id "XLOC_000007"; oId "CUFF.11.1"; class_code "u"; tss_id "TSS7"; -chr1 Cufflinks exon 3189811 3190789 . . . transcript_id "TCONS_00000054"; gene_id "XLOC_000007"; exon_number "1"; -chr1 Cufflinks transcript 3189900 3190041 . . . transcript_id "TCONS_00000004"; gene_id "XLOC_000007"; oId "CUFF.29.1"; contained_in "TCONS_00000054"; class_code "u"; tss_id "TSS7"; -chr1 Cufflinks exon 3189900 3190041 . . . transcript_id "TCONS_00000004"; gene_id "XLOC_000007"; exon_number "1"; -chr1 Cufflinks transcript 3190273 3190303 . . . transcript_id "TCONS_00000005"; gene_id "XLOC_000007"; oId "CUFF.31.1"; contained_in "TCONS_00000054"; class_code "u"; tss_id "TSS8"; -chr1 Cufflinks exon 3190273 3190303 . . . transcript_id "TCONS_00000005"; gene_id "XLOC_000007"; exon_number "1"; -chr1 Cufflinks transcript 3190455 3190481 . . . transcript_id "TCONS_00000006"; gene_id "XLOC_000007"; oId "CUFF.33.1"; contained_in "TCONS_00000054"; class_code "u"; tss_id "TSS9"; -chr1 Cufflinks exon 3190455 3190481 . . . transcript_id "TCONS_00000006"; gene_id "XLOC_000007"; exon_number "1"; -chr1 Cufflinks transcript 3190859 3191434 . . . transcript_id "TCONS_00000055"; gene_id "XLOC_000008"; oId "CUFF.7.1"; class_code "u"; tss_id "TSS10"; -chr1 Cufflinks exon 3190859 3191434 . . . transcript_id "TCONS_00000055"; gene_id "XLOC_000008"; exon_number "1"; -chr1 Cufflinks transcript 3191513 3192077 . . . transcript_id "TCONS_00000056"; gene_id "XLOC_000009"; oId "CUFF.9.1"; class_code "u"; tss_id "TSS11"; -chr1 Cufflinks exon 3191513 3192077 . . . transcript_id "TCONS_00000056"; gene_id "XLOC_000009"; exon_number "1"; -chr1 Cufflinks transcript 3191539 3191669 . . . transcript_id "TCONS_00000007"; gene_id "XLOC_000009"; oId "CUFF.35.1"; contained_in "TCONS_00000056"; class_code "u"; tss_id "TSS11"; -chr1 Cufflinks exon 3191539 3191669 . . . transcript_id "TCONS_00000007"; gene_id "XLOC_000009"; exon_number "1"; -chr1 Cufflinks transcript 3191877 3191945 . . . transcript_id "TCONS_00000008"; gene_id "XLOC_000009"; oId "CUFF.37.1"; contained_in "TCONS_00000056"; class_code "u"; tss_id "TSS12"; -chr1 Cufflinks exon 3191877 3191945 . . . transcript_id "TCONS_00000008"; gene_id "XLOC_000009"; exon_number "1"; -chr1 Cufflinks transcript 3192251 3192336 . . . transcript_id "TCONS_00000057"; gene_id "XLOC_000010"; oId "CUFF.13.1"; class_code "u"; tss_id "TSS13"; -chr1 Cufflinks exon 3192251 3192336 . . . transcript_id "TCONS_00000057"; gene_id "XLOC_000010"; exon_number "1"; -chr1 Cufflinks transcript 3192442 3192494 . . . transcript_id "TCONS_00000009"; gene_id "XLOC_000011"; oId "CUFF.39.1"; class_code "u"; tss_id "TSS14"; -chr1 Cufflinks exon 3192442 3192494 . . . transcript_id "TCONS_00000009"; gene_id "XLOC_000011"; exon_number "1"; -chr1 Cufflinks transcript 3192551 3192629 . . . transcript_id "TCONS_00000010"; gene_id "XLOC_000012"; oId "CUFF.41.1"; class_code "u"; tss_id "TSS15"; -chr1 Cufflinks exon 3192551 3192629 . . . transcript_id "TCONS_00000010"; gene_id "XLOC_000012"; exon_number "1"; -chr1 Cufflinks transcript 3192650 3192676 . . . transcript_id "TCONS_00000058"; gene_id "XLOC_000013"; oId "CUFF.15.1"; class_code "u"; tss_id "TSS16"; -chr1 Cufflinks exon 3192650 3192676 . . . transcript_id "TCONS_00000058"; gene_id "XLOC_000013"; exon_number "1"; -chr1 Cufflinks transcript 3192732 3192811 . . . transcript_id "TCONS_00000011"; gene_id "XLOC_000014"; oId "CUFF.43.1"; class_code "u"; tss_id "TSS17"; -chr1 Cufflinks exon 3192732 3192811 . . . transcript_id "TCONS_00000011"; gene_id "XLOC_000014"; exon_number "1"; -chr1 Cufflinks transcript 3192941 3193042 . . . transcript_id "TCONS_00000012"; gene_id "XLOC_000015"; oId "CUFF.45.1"; class_code "u"; tss_id "TSS18"; -chr1 Cufflinks exon 3192941 3193042 . . . transcript_id "TCONS_00000012"; gene_id "XLOC_000015"; exon_number "1"; -chr1 Cufflinks transcript 3194186 3194226 . . . transcript_id "TCONS_00000013"; gene_id "XLOC_000016"; oId "CUFF.47.1"; class_code "u"; tss_id "TSS19"; -chr1 Cufflinks exon 3194186 3194226 . . . transcript_id "TCONS_00000013"; gene_id "XLOC_000016"; exon_number "1"; -chr1 Cufflinks transcript 3194303 3194329 . . . transcript_id "TCONS_00000014"; gene_id "XLOC_000017"; oId "CUFF.49.1"; class_code "u"; tss_id "TSS20"; -chr1 Cufflinks exon 3194303 3194329 . . . transcript_id "TCONS_00000014"; gene_id "XLOC_000017"; exon_number "1"; -chr1 Cufflinks transcript 3194707 3194733 . . . transcript_id "TCONS_00000059"; gene_id "XLOC_000018"; oId "CUFF.17.1"; class_code "u"; tss_id "TSS21"; -chr1 Cufflinks exon 3194707 3194733 . . . transcript_id "TCONS_00000059"; gene_id "XLOC_000018"; exon_number "1"; -chr1 Cufflinks transcript 3195084 3195110 . . . transcript_id "TCONS_00000015"; gene_id "XLOC_000019"; oId "CUFF.51.1"; class_code "u"; tss_id "TSS22"; -chr1 Cufflinks exon 3195084 3195110 . . . transcript_id "TCONS_00000015"; gene_id "XLOC_000019"; exon_number "1"; -chr1 Cufflinks transcript 3195451 3195477 . . . transcript_id "TCONS_00000016"; gene_id "XLOC_000020"; oId "CUFF.53.1"; class_code "u"; tss_id "TSS23"; -chr1 Cufflinks exon 3195451 3195477 . . . transcript_id "TCONS_00000016"; gene_id "XLOC_000020"; exon_number "1"; -chr1 Cufflinks transcript 3197090 3197116 . . . transcript_id "TCONS_00000017"; gene_id "XLOC_000021"; oId "CUFF.55.1"; class_code "u"; tss_id "TSS24"; -chr1 Cufflinks exon 3197090 3197116 . . . transcript_id "TCONS_00000017"; gene_id "XLOC_000021"; exon_number "1"; -chr1 Cufflinks transcript 3197247 3197273 . . . transcript_id "TCONS_00000018"; gene_id "XLOC_000022"; oId "CUFF.57.1"; class_code "u"; tss_id "TSS25"; -chr1 Cufflinks exon 3197247 3197273 . . . transcript_id "TCONS_00000018"; gene_id "XLOC_000022"; exon_number "1"; -chr1 Cufflinks transcript 3197347 3197373 . . . transcript_id "TCONS_00000019"; gene_id "XLOC_000023"; oId "CUFF.59.1"; class_code "u"; tss_id "TSS26"; -chr1 Cufflinks exon 3197347 3197373 . . . transcript_id "TCONS_00000019"; gene_id "XLOC_000023"; exon_number "1"; -chr1 Cufflinks transcript 3197426 3197452 . . . transcript_id "TCONS_00000060"; gene_id "XLOC_000024"; oId "CUFF.19.1"; class_code "u"; tss_id "TSS27"; -chr1 Cufflinks exon 3197426 3197452 . . . transcript_id "TCONS_00000060"; gene_id "XLOC_000024"; exon_number "1"; -chr1 Cufflinks transcript 3200023 3200191 . . . transcript_id "TCONS_00000020"; gene_id "XLOC_000025"; oId "CUFF.7.1"; class_code "u"; tss_id "TSS28"; -chr1 Cufflinks exon 3200023 3200191 . . . transcript_id "TCONS_00000020"; gene_id "XLOC_000025"; exon_number "1"; -chr1 Cufflinks transcript 3200057 3200144 . . . transcript_id "TCONS_00000061"; gene_id "XLOC_000025"; oId "CUFF.23.1"; contained_in "TCONS_00000020"; class_code "u"; tss_id "TSS28"; -chr1 Cufflinks exon 3200057 3200144 . . . transcript_id "TCONS_00000061"; gene_id "XLOC_000025"; exon_number "1"; -chr1 Cufflinks transcript 3200326 3200352 . . . transcript_id "TCONS_00000021"; gene_id "XLOC_000026"; oId "CUFF.5.1"; class_code "u"; tss_id "TSS29"; -chr1 Cufflinks exon 3200326 3200352 . . . transcript_id "TCONS_00000021"; gene_id "XLOC_000026"; exon_number "1"; -chr1 Cufflinks transcript 3200431 3200457 . . . transcript_id "TCONS_00000062"; gene_id "XLOC_000027"; oId "CUFF.21.1"; class_code "u"; tss_id "TSS30"; -chr1 Cufflinks exon 3200431 3200457 . . . transcript_id "TCONS_00000062"; gene_id "XLOC_000027"; exon_number "1"; -chr1 Cufflinks transcript 3201008 3201039 . . . transcript_id "TCONS_00000063"; gene_id "XLOC_000028"; oId "CUFF.26.1"; class_code "u"; tss_id "TSS31"; -chr1 Cufflinks exon 3201008 3201039 . . . transcript_id "TCONS_00000063"; gene_id "XLOC_000028"; exon_number "1"; -chr1 Cufflinks transcript 3201078 3201481 . . . transcript_id "TCONS_00000022"; gene_id "XLOC_000029"; oId "CUFF.9.1"; class_code "u"; tss_id "TSS32"; -chr1 Cufflinks exon 3201078 3201481 . . . transcript_id "TCONS_00000022"; gene_id "XLOC_000029"; exon_number "1"; -chr1 Cufflinks transcript 3201161 3201187 . . . transcript_id "TCONS_00000064"; gene_id "XLOC_000029"; oId "CUFF.25.1"; contained_in "TCONS_00000022"; class_code "u"; tss_id "TSS32"; -chr1 Cufflinks exon 3201161 3201187 . . . transcript_id "TCONS_00000064"; gene_id "XLOC_000029"; exon_number "1"; -chr1 Cufflinks transcript 3201597 3201666 . . . transcript_id "TCONS_00000065"; gene_id "XLOC_000030"; oId "CUFF.29.1"; class_code "u"; tss_id "TSS33"; -chr1 Cufflinks exon 3201597 3201666 . . . transcript_id "TCONS_00000065"; gene_id "XLOC_000030"; exon_number "1"; -chr1 Cufflinks transcript 3201673 3201699 . . . transcript_id "TCONS_00000023"; gene_id "XLOC_000031"; oId "CUFF.11.1"; class_code "u"; tss_id "TSS34"; -chr1 Cufflinks exon 3201673 3201699 . . . transcript_id "TCONS_00000023"; gene_id "XLOC_000031"; exon_number "1"; -chr1 Cufflinks transcript 3201726 3201809 . . . transcript_id "TCONS_00000066"; gene_id "XLOC_000032"; oId "CUFF.31.1"; class_code "u"; tss_id "TSS35"; -chr1 Cufflinks exon 3201726 3201809 . . . transcript_id "TCONS_00000066"; gene_id "XLOC_000032"; exon_number "1"; -chr1 Cufflinks transcript 3211522 3211561 . . . transcript_id "TCONS_00000067"; gene_id "XLOC_000033"; gene_name "Xkr4"; oId "CUFF.33.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS36"; -chr1 Cufflinks exon 3211522 3211561 . . . transcript_id "TCONS_00000067"; gene_id "XLOC_000033"; exon_number "1"; -chr1 Cufflinks transcript 3212214 3212292 . . . transcript_id "TCONS_00000024"; gene_id "XLOC_000034"; gene_name "Xkr4"; oId "CUFF.15.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS37"; -chr1 Cufflinks exon 3212214 3212292 . . . transcript_id "TCONS_00000024"; gene_id "XLOC_000034"; exon_number "1"; -chr1 Cufflinks transcript 3212368 3212439 . . . transcript_id "TCONS_00000025"; gene_id "XLOC_000035"; gene_name "Xkr4"; oId "CUFF.19.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS38"; -chr1 Cufflinks exon 3212368 3212439 . . . transcript_id "TCONS_00000025"; gene_id "XLOC_000035"; exon_number "1"; -chr1 Cufflinks transcript 3212718 3212801 . . . transcript_id "TCONS_00000068"; gene_id "XLOC_000036"; gene_name "Xkr4"; oId "CUFF.35.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS39"; -chr1 Cufflinks exon 3212718 3212801 . . . transcript_id "TCONS_00000068"; gene_id "XLOC_000036"; exon_number "1"; -chr1 Cufflinks transcript 3213096 3213192 . . . transcript_id "TCONS_00000026"; gene_id "XLOC_000037"; gene_name "Xkr4"; oId "CUFF.17.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS40"; -chr1 Cufflinks exon 3213096 3213192 . . . transcript_id "TCONS_00000026"; gene_id "XLOC_000037"; exon_number "1"; -chr1 Cufflinks transcript 3213119 3213242 . . . transcript_id "TCONS_00000069"; gene_id "XLOC_000037"; gene_name "Xkr4"; oId "CUFF.37.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS40"; -chr1 Cufflinks exon 3213119 3213242 . . . transcript_id "TCONS_00000069"; gene_id "XLOC_000037"; exon_number "1"; -chr1 Cufflinks transcript 3240607 3240633 . . . transcript_id "TCONS_00000070"; gene_id "XLOC_000038"; gene_name "Xkr4"; oId "CUFF.39.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS41"; -chr1 Cufflinks exon 3240607 3240633 . . . transcript_id "TCONS_00000070"; gene_id "XLOC_000038"; exon_number "1"; -chr1 Cufflinks transcript 3242480 3242512 . . . transcript_id "TCONS_00000071"; gene_id "XLOC_000039"; gene_name "Xkr4"; oId "CUFF.41.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS42"; -chr1 Cufflinks exon 3242480 3242512 . . . transcript_id "TCONS_00000071"; gene_id "XLOC_000039"; exon_number "1"; -chr1 Cufflinks transcript 3242634 3242923 . . . transcript_id "TCONS_00000027"; gene_id "XLOC_000040"; gene_name "Xkr4"; oId "CUFF.25.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS43"; -chr1 Cufflinks exon 3242634 3242923 . . . transcript_id "TCONS_00000027"; gene_id "XLOC_000040"; exon_number "1"; -chr1 Cufflinks transcript 3242925 3243005 . . . transcript_id "TCONS_00000072"; gene_id "XLOC_000041"; gene_name "Xkr4"; oId "CUFF.43.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS44"; -chr1 Cufflinks exon 3242925 3243005 . . . transcript_id "TCONS_00000072"; gene_id "XLOC_000041"; exon_number "1"; -chr1 Cufflinks transcript 3243019 3243079 . . . transcript_id "TCONS_00000028"; gene_id "XLOC_000042"; gene_name "Xkr4"; oId "CUFF.21.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS45"; -chr1 Cufflinks exon 3243019 3243079 . . . transcript_id "TCONS_00000028"; gene_id "XLOC_000042"; exon_number "1"; -chr1 Cufflinks transcript 3243109 3243154 . . . transcript_id "TCONS_00000073"; gene_id "XLOC_000043"; gene_name "Xkr4"; oId "CUFF.45.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS46"; -chr1 Cufflinks exon 3243109 3243154 . . . transcript_id "TCONS_00000073"; gene_id "XLOC_000043"; exon_number "1"; -chr1 Cufflinks transcript 3243348 3243401 . . . transcript_id "TCONS_00000029"; gene_id "XLOC_000044"; gene_name "Xkr4"; oId "CUFF.23.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS47"; -chr1 Cufflinks exon 3243348 3243401 . . . transcript_id "TCONS_00000029"; gene_id "XLOC_000044"; exon_number "1"; -chr1 Cufflinks transcript 3254080 3254106 . . . transcript_id "TCONS_00000074"; gene_id "XLOC_000045"; gene_name "Xkr4"; oId "CUFF.47.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS48"; -chr1 Cufflinks exon 3254080 3254106 . . . transcript_id "TCONS_00000074"; gene_id "XLOC_000045"; exon_number "1"; -chr1 Cufflinks transcript 3256975 3257011 . . . transcript_id "TCONS_00000030"; gene_id "XLOC_000046"; gene_name "Xkr4"; oId "CUFF.27.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS49"; -chr1 Cufflinks exon 3256975 3257011 . . . transcript_id "TCONS_00000030"; gene_id "XLOC_000046"; exon_number "1"; -chr1 Cufflinks transcript 3277156 3277182 . . . transcript_id "TCONS_00000075"; gene_id "XLOC_000047"; gene_name "Xkr4"; oId "CUFF.49.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS50"; -chr1 Cufflinks exon 3277156 3277182 . . . transcript_id "TCONS_00000075"; gene_id "XLOC_000047"; exon_number "1"; -chr1 Cufflinks transcript 3277191 3277218 . . . transcript_id "TCONS_00000031"; gene_id "XLOC_000048"; gene_name "Xkr4"; oId "CUFF.61.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS51"; -chr1 Cufflinks exon 3277191 3277218 . . . transcript_id "TCONS_00000031"; gene_id "XLOC_000048"; exon_number "1"; -chr1 Cufflinks transcript 3277914 3278390 . . . transcript_id "TCONS_00000076"; gene_id "XLOC_000049"; gene_name "Xkr4"; oId "CUFF.51.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS52"; -chr1 Cufflinks exon 3277914 3278390 . . . transcript_id "TCONS_00000076"; gene_id "XLOC_000049"; exon_number "1"; -chr1 Cufflinks transcript 3278237 3278263 . . . transcript_id "TCONS_00000032"; gene_id "XLOC_000049"; gene_name "Xkr4"; oId "CUFF.63.1"; contained_in "TCONS_00000076"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS53"; -chr1 Cufflinks exon 3278237 3278263 . . . transcript_id "TCONS_00000032"; gene_id "XLOC_000049"; exon_number "1"; -chr1 Cufflinks transcript 3280118 3280144 . . . transcript_id "TCONS_00000077"; gene_id "XLOC_000050"; gene_name "Xkr4"; oId "CUFF.53.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS54"; -chr1 Cufflinks exon 3280118 3280144 . . . transcript_id "TCONS_00000077"; gene_id "XLOC_000050"; exon_number "1"; -chr1 Cufflinks transcript 3280499 3280525 . . . transcript_id "TCONS_00000078"; gene_id "XLOC_000051"; gene_name "Xkr4"; oId "CUFF.55.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS55"; -chr1 Cufflinks exon 3280499 3280525 . . . transcript_id "TCONS_00000078"; gene_id "XLOC_000051"; exon_number "1"; -chr1 Cufflinks transcript 3280687 3280741 . . . transcript_id "TCONS_00000033"; gene_id "XLOC_000052"; gene_name "Xkr4"; oId "CUFF.65.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS56"; -chr1 Cufflinks exon 3280687 3280741 . . . transcript_id "TCONS_00000033"; gene_id "XLOC_000052"; exon_number "1"; -chr1 Cufflinks transcript 3282505 3282531 . . . transcript_id "TCONS_00000079"; gene_id "XLOC_000053"; gene_name "Xkr4"; oId "CUFF.57.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS57"; -chr1 Cufflinks exon 3282505 3282531 . . . transcript_id "TCONS_00000079"; gene_id "XLOC_000053"; exon_number "1"; -chr1 Cufflinks transcript 3282651 3282677 . . . transcript_id "TCONS_00000080"; gene_id "XLOC_000054"; gene_name "Xkr4"; oId "CUFF.59.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS58"; -chr1 Cufflinks exon 3282651 3282677 . . . transcript_id "TCONS_00000080"; gene_id "XLOC_000054"; exon_number "1"; -chr1 Cufflinks transcript 3282761 3282832 . . . transcript_id "TCONS_00000081"; gene_id "XLOC_000055"; gene_name "Xkr4"; oId "CUFF.61.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS59"; -chr1 Cufflinks exon 3282761 3282832 . . . transcript_id "TCONS_00000081"; gene_id "XLOC_000055"; exon_number "1"; -chr1 Cufflinks transcript 3284967 3284993 . . . transcript_id "TCONS_00000082"; gene_id "XLOC_000056"; gene_name "Xkr4"; oId "CUFF.63.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS60"; -chr1 Cufflinks exon 3284967 3284993 . . . transcript_id "TCONS_00000082"; gene_id "XLOC_000056"; exon_number "1"; -chr1 Cufflinks transcript 3290489 3290553 . . . transcript_id "TCONS_00000034"; gene_id "XLOC_000057"; gene_name "Xkr4"; oId "CUFF.67.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS61"; -chr1 Cufflinks exon 3290489 3290553 . . . transcript_id "TCONS_00000034"; gene_id "XLOC_000057"; exon_number "1"; -chr1 Cufflinks transcript 3290799 3290859 . . . transcript_id "TCONS_00000083"; gene_id "XLOC_000058"; gene_name "Xkr4"; oId "CUFF.65.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS62"; -chr1 Cufflinks exon 3290799 3290859 . . . transcript_id "TCONS_00000083"; gene_id "XLOC_000058"; exon_number "1"; -chr1 Cufflinks transcript 3290920 3291273 . . . transcript_id "TCONS_00000084"; gene_id "XLOC_000059"; gene_name "Xkr4"; oId "CUFF.69.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS63"; -chr1 Cufflinks exon 3290920 3291273 . . . transcript_id "TCONS_00000084"; gene_id "XLOC_000059"; exon_number "1"; -chr1 Cufflinks transcript 3290940 3291023 . . . transcript_id "TCONS_00000035"; gene_id "XLOC_000059"; gene_name "Xkr4"; oId "CUFF.69.1"; contained_in "TCONS_00000084"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS63"; -chr1 Cufflinks exon 3290940 3291023 . . . transcript_id "TCONS_00000035"; gene_id "XLOC_000059"; exon_number "1"; -chr1 Cufflinks transcript 3291089 3291186 . . . transcript_id "TCONS_00000036"; gene_id "XLOC_000059"; gene_name "Xkr4"; oId "CUFF.71.1"; contained_in "TCONS_00000084"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS64"; -chr1 Cufflinks exon 3291089 3291186 . . . transcript_id "TCONS_00000036"; gene_id "XLOC_000059"; exon_number "1"; -chr1 Cufflinks transcript 3299444 3299640 . . . transcript_id "TCONS_00000085"; gene_id "XLOC_000060"; gene_name "Xkr4"; oId "CUFF.67.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS65"; -chr1 Cufflinks exon 3299444 3299640 . . . transcript_id "TCONS_00000085"; gene_id "XLOC_000060"; exon_number "1"; -chr1 Cufflinks transcript 3299610 3299664 . . . transcript_id "TCONS_00000037"; gene_id "XLOC_000060"; gene_name "Xkr4"; oId "CUFF.73.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS66"; -chr1 Cufflinks exon 3299610 3299664 . . . transcript_id "TCONS_00000037"; gene_id "XLOC_000060"; exon_number "1"; -chr1 Cufflinks transcript 3299692 3299733 . . . transcript_id "TCONS_00000086"; gene_id "XLOC_000061"; gene_name "Xkr4"; oId "CUFF.71.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS67"; -chr1 Cufflinks exon 3299692 3299733 . . . transcript_id "TCONS_00000086"; gene_id "XLOC_000061"; exon_number "1"; -chr1 Cufflinks transcript 3300052 3300078 . . . transcript_id "TCONS_00000038"; gene_id "XLOC_000062"; gene_name "Xkr4"; oId "CUFF.75.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS68"; -chr1 Cufflinks exon 3300052 3300078 . . . transcript_id "TCONS_00000038"; gene_id "XLOC_000062"; exon_number "1"; -chr1 Cufflinks transcript 3307749 3307775 . . . transcript_id "TCONS_00000087"; gene_id "XLOC_000063"; gene_name "Xkr4"; oId "CUFF.73.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS69"; -chr1 Cufflinks exon 3307749 3307775 . . . transcript_id "TCONS_00000087"; gene_id "XLOC_000063"; exon_number "1"; -chr1 Cufflinks transcript 3318621 3318647 . . . transcript_id "TCONS_00000088"; gene_id "XLOC_000064"; gene_name "Xkr4"; oId "CUFF.75.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS70"; -chr1 Cufflinks exon 3318621 3318647 . . . transcript_id "TCONS_00000088"; gene_id "XLOC_000064"; exon_number "1"; -chr1 Cufflinks transcript 3319000 3319051 . . . transcript_id "TCONS_00000039"; gene_id "XLOC_000065"; gene_name "Xkr4"; oId "CUFF.77.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS71"; -chr1 Cufflinks exon 3319000 3319051 . . . transcript_id "TCONS_00000039"; gene_id "XLOC_000065"; exon_number "1"; -chr1 Cufflinks transcript 3330528 3330554 . . . transcript_id "TCONS_00000089"; gene_id "XLOC_000066"; gene_name "Xkr4"; oId "CUFF.77.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS72"; -chr1 Cufflinks exon 3330528 3330554 . . . transcript_id "TCONS_00000089"; gene_id "XLOC_000066"; exon_number "1"; -chr1 Cufflinks transcript 3351241 3351311 . . . transcript_id "TCONS_00000090"; gene_id "XLOC_000067"; gene_name "Xkr4"; oId "CUFF.79.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS73"; -chr1 Cufflinks exon 3351241 3351311 . . . transcript_id "TCONS_00000090"; gene_id "XLOC_000067"; exon_number "1"; -chr1 Cufflinks transcript 3355888 3355914 . . . transcript_id "TCONS_00000040"; gene_id "XLOC_000068"; gene_name "Xkr4"; oId "CUFF.79.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS74"; -chr1 Cufflinks exon 3355888 3355914 . . . transcript_id "TCONS_00000040"; gene_id "XLOC_000068"; exon_number "1"; -chr1 Cufflinks transcript 3355908 3356119 . . . transcript_id "TCONS_00000091"; gene_id "XLOC_000068"; gene_name "Xkr4"; oId "CUFF.81.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS74"; -chr1 Cufflinks exon 3355908 3356119 . . . transcript_id "TCONS_00000091"; gene_id "XLOC_000068"; exon_number "1"; -chr1 Cufflinks transcript 3356181 3356225 . . . transcript_id "TCONS_00000092"; gene_id "XLOC_000069"; gene_name "Xkr4"; oId "CUFF.83.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS75"; -chr1 Cufflinks exon 3356181 3356225 . . . transcript_id "TCONS_00000092"; gene_id "XLOC_000069"; exon_number "1"; -chr1 Cufflinks transcript 3363077 3363176 . . . transcript_id "TCONS_00000093"; gene_id "XLOC_000070"; gene_name "Xkr4"; oId "CUFF.85.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS76"; -chr1 Cufflinks exon 3363077 3363176 . . . transcript_id "TCONS_00000093"; gene_id "XLOC_000070"; exon_number "1"; -chr1 Cufflinks transcript 3363215 3363278 . . . transcript_id "TCONS_00000041"; gene_id "XLOC_000071"; gene_name "Xkr4"; oId "CUFF.81.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS77"; -chr1 Cufflinks exon 3363215 3363278 . . . transcript_id "TCONS_00000041"; gene_id "XLOC_000071"; exon_number "1"; -chr1 Cufflinks transcript 3363388 3363446 . . . transcript_id "TCONS_00000094"; gene_id "XLOC_000072"; gene_name "Xkr4"; oId "CUFF.87.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS78"; -chr1 Cufflinks exon 3363388 3363446 . . . transcript_id "TCONS_00000094"; gene_id "XLOC_000072"; exon_number "1"; -chr1 Cufflinks transcript 3363754 3363849 . . . transcript_id "TCONS_00000042"; gene_id "XLOC_000073"; gene_name "Xkr4"; oId "CUFF.83.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS79"; -chr1 Cufflinks exon 3363754 3363849 . . . transcript_id "TCONS_00000042"; gene_id "XLOC_000073"; exon_number "1"; -chr1 Cufflinks transcript 3364872 3364919 . . . transcript_id "TCONS_00000095"; gene_id "XLOC_000074"; gene_name "Xkr4"; oId "CUFF.89.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS80"; -chr1 Cufflinks exon 3364872 3364919 . . . transcript_id "TCONS_00000095"; gene_id "XLOC_000074"; exon_number "1"; -chr1 Cufflinks transcript 3367136 3367162 . . . transcript_id "TCONS_00000043"; gene_id "XLOC_000075"; gene_name "Xkr4"; oId "CUFF.85.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS81"; -chr1 Cufflinks exon 3367136 3367162 . . . transcript_id "TCONS_00000043"; gene_id "XLOC_000075"; exon_number "1"; -chr1 Cufflinks transcript 3367211 3367237 . . . transcript_id "TCONS_00000096"; gene_id "XLOC_000076"; gene_name "Xkr4"; oId "CUFF.91.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS82"; -chr1 Cufflinks exon 3367211 3367237 . . . transcript_id "TCONS_00000096"; gene_id "XLOC_000076"; exon_number "1"; -chr1 Cufflinks transcript 3367334 3367382 . . . transcript_id "TCONS_00000044"; gene_id "XLOC_000077"; gene_name "Xkr4"; oId "CUFF.87.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS83"; -chr1 Cufflinks exon 3367334 3367382 . . . transcript_id "TCONS_00000044"; gene_id "XLOC_000077"; exon_number "1"; -chr1 Cufflinks transcript 3369581 3369607 . . . transcript_id "TCONS_00000097"; gene_id "XLOC_000078"; gene_name "Xkr4"; oId "CUFF.93.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS84"; -chr1 Cufflinks exon 3369581 3369607 . . . transcript_id "TCONS_00000097"; gene_id "XLOC_000078"; exon_number "1"; -chr1 Cufflinks transcript 3375002 3375028 . . . transcript_id "TCONS_00000098"; gene_id "XLOC_000079"; gene_name "Xkr4"; oId "CUFF.95.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS85"; -chr1 Cufflinks exon 3375002 3375028 . . . transcript_id "TCONS_00000098"; gene_id "XLOC_000079"; exon_number "1"; -chr1 Cufflinks transcript 3377212 3377262 . . . transcript_id "TCONS_00000045"; gene_id "XLOC_000080"; gene_name "Xkr4"; oId "CUFF.89.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS86"; -chr1 Cufflinks exon 3377212 3377262 . . . transcript_id "TCONS_00000045"; gene_id "XLOC_000080"; exon_number "1"; -chr1 Cufflinks transcript 3379889 3379915 . . . transcript_id "TCONS_00000099"; gene_id "XLOC_000081"; gene_name "Xkr4"; oId "CUFF.97.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS87"; -chr1 Cufflinks exon 3379889 3379915 . . . transcript_id "TCONS_00000099"; gene_id "XLOC_000081"; exon_number "1"; -chr1 Cufflinks transcript 3386740 3386836 . . . transcript_id "TCONS_00000100"; gene_id "XLOC_000082"; gene_name "Xkr4"; oId "CUFF.99.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS88"; -chr1 Cufflinks exon 3386740 3386836 . . . transcript_id "TCONS_00000100"; gene_id "XLOC_000082"; exon_number "1"; -chr1 Cufflinks transcript 3391326 3391352 . . . transcript_id "TCONS_00000046"; gene_id "XLOC_000083"; gene_name "Xkr4"; oId "CUFF.91.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS89"; -chr1 Cufflinks exon 3391326 3391352 . . . transcript_id "TCONS_00000046"; gene_id "XLOC_000083"; exon_number "1"; -chr1 Cufflinks transcript 3435842 3435880 . . . transcript_id "TCONS_00000047"; gene_id "XLOC_000084"; gene_name "Xkr4"; oId "CUFF.93.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS90"; -chr1 Cufflinks exon 3435842 3435880 . . . transcript_id "TCONS_00000047"; gene_id "XLOC_000084"; exon_number "1"; -chr1 Cufflinks transcript 3447762 3447788 . . . transcript_id "TCONS_00000048"; gene_id "XLOC_000085"; gene_name "Xkr4"; oId "CUFF.95.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS91"; -chr1 Cufflinks exon 3447762 3447788 . . . transcript_id "TCONS_00000048"; gene_id "XLOC_000085"; exon_number "1"; -chr1 Cufflinks transcript 3450907 3450965 . . . transcript_id "TCONS_00000049"; gene_id "XLOC_000086"; gene_name "Xkr4"; oId "CUFF.97.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS92"; -chr1 Cufflinks exon 3450907 3450965 . . . transcript_id "TCONS_00000049"; gene_id "XLOC_000086"; exon_number "1"; -chr1 Cufflinks transcript 3451052 3451109 . . . transcript_id "TCONS_00000050"; gene_id "XLOC_000087"; gene_name "Xkr4"; oId "CUFF.99.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS93"; -chr1 Cufflinks exon 3451052 3451109 . . . transcript_id "TCONS_00000050"; gene_id "XLOC_000087"; exon_number "1"; +chr1 Cufflinks transcript 12 20 . + . transcript_id "TCONS_00000006"; gene_id "XLOC_000001"; oId "CUFF.3.1"; tss_id "TSS1"; +chr1 Cufflinks exon 12 20 . + . transcript_id "TCONS_00000006"; gene_id "XLOC_000001"; exon_number "1"; +chr1 Cufflinks transcript 32 40 . + . transcript_id "TCONS_00000001"; gene_id "XLOC_000002"; oId "CUFF.7.1"; tss_id "TSS2"; +chr1 Cufflinks exon 32 40 . + . transcript_id "TCONS_00000001"; gene_id "XLOC_000002"; exon_number "1"; +chr1 Cufflinks transcript 42 47 . + . transcript_id "TCONS_00000007"; gene_id "XLOC_000003"; oId "CUFF.7.1"; contained_in "TCONS_00000002"; tss_id "TSS3"; +chr1 Cufflinks exon 42 47 . + . transcript_id "TCONS_00000007"; gene_id "XLOC_000003"; exon_number "1"; +chr1 Cufflinks transcript 42 50 . + . transcript_id "TCONS_00000002"; gene_id "XLOC_000003"; oId "CUFF.9.1"; tss_id "TSS3"; +chr1 Cufflinks exon 42 50 . + . transcript_id "TCONS_00000002"; gene_id "XLOC_000003"; exon_number "1"; +chr1 Cufflinks transcript 52 60 . + . transcript_id "TCONS_00000003"; gene_id "XLOC_000004"; oId "CUFF.10.1"; tss_id "TSS4"; +chr1 Cufflinks exon 52 60 . + . transcript_id "TCONS_00000003"; gene_id "XLOC_000004"; exon_number "1"; +chr1 Cufflinks transcript 2 10 . - . transcript_id "TCONS_00000004"; gene_id "XLOC_000005"; oId "CUFF.1.1"; tss_id "TSS5"; +chr1 Cufflinks exon 2 10 . - . transcript_id "TCONS_00000004"; gene_id "XLOC_000005"; exon_number "1"; +chr1 Cufflinks transcript 15 20 . - . transcript_id "TCONS_00000005"; gene_id "XLOC_000006"; oId "CUFF.3.1"; tss_id "TSS6"; +chr1 Cufflinks exon 15 20 . - . transcript_id "TCONS_00000005"; gene_id "XLOC_000006"; exon_number "1"; +chr1 Cufflinks transcript 22 30 . - . transcript_id "TCONS_00000008"; gene_id "XLOC_000007"; oId "CUFF.5.1"; tss_id "TSS7"; +chr1 Cufflinks exon 22 30 . - . transcript_id "TCONS_00000008"; gene_id "XLOC_000007"; exon_number "1";