Mercurial > repos > iuc > gffcompare
diff test-data/gffcompare_out1.stats @ 3:2bb86e2c417f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
| author | iuc |
|---|---|
| date | Mon, 27 May 2019 13:54:15 -0400 |
| parents | f99d7825a501 |
| children | f99dd58de04f |
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--- a/test-data/gffcompare_out1.stats Tue Feb 05 15:51:44 2019 -0500 +++ b/test-data/gffcompare_out1.stats Mon May 27 13:54:15 2019 -0400 @@ -1,35 +1,15 @@ -# gffcompare v0.10.6 | Command line was: -#gffcompare -r /tmp/tmp7AvPf0/files/000/dataset_3.dat -R -e 100 -d 100 -p TCONS gffcompare_in1_gtf gffcompare_in2_gtf +# gffcompare v0.11.2 | Command line was: +#gffcompare -e 100 -d 100 -p TCONS gffcompare_in1_gtf gffcompare_in2_gtf # #= Summary for dataset: gffcompare_in1_gtf -# Query mRNAs : 50 in 50 loci (0 multi-exon transcripts) +# Query mRNAs : 5 in 5 loci (0 multi-exon transcripts) # (0 multi-transcript loci, ~1.0 transcripts per locus) -# Reference mRNAs : 1 in 1 loci (1 multi-exon) -# Super-loci w/ reference transcripts: 1 -#-----------------| Sensitivity | Precision | - Base level: 2.2 | 2.3 | - Exon level: 0.0 | 0.0 | - Intron level: 0.0 | -nan | -Intron chain level: 0.0 | -nan | - Transcript level: 0.0 | 0.0 | - Locus level: 0.0 | 0.0 | - - Matching intron chains: 0 - Matching transcripts: 0 - Matching loci: 0 - - Missed exons: 2/3 ( 66.7%) - Novel exons: 49/50 ( 98.0%) - Missed introns: 2/2 (100.0%) - Missed loci: 0/1 ( 0.0%) - Novel loci: 49/50 ( 98.0%) #= Summary for dataset: gffcompare_in2_gtf -# Query mRNAs : 50 in 50 loci (0 multi-exon transcripts) +# Query mRNAs : 4 in 4 loci (0 multi-exon transcripts) # (0 multi-transcript loci, ~1.0 transcripts per locus) -# Reference mRNAs : 0 in 0 loci (0 multi-exon) - Total union super-loci across all input datasets: 87 + Total union super-loci across all input datasets: 7 (0 multi-transcript, ~1.1 transcripts per locus) -100 out of 100 consensus transcripts written in gffcmp.combined.gtf (0 discarded as redundant) +8 out of 8 consensus transcripts written in gffcmp.combined.gtf (0 discarded as redundant)