Mercurial > repos > iuc > gffcompare
diff test-data/gffcompare_out2.stats @ 3:2bb86e2c417f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
| author | iuc |
|---|---|
| date | Mon, 27 May 2019 13:54:15 -0400 |
| parents | f99d7825a501 |
| children | f99dd58de04f |
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--- a/test-data/gffcompare_out2.stats Tue Feb 05 15:51:44 2019 -0500 +++ b/test-data/gffcompare_out2.stats Mon May 27 13:54:15 2019 -0400 @@ -1,30 +1,47 @@ -# gffcompare v0.10.6 | Command line was: -#gffcompare -r /tmp/tmp7AvPf0/files/000/dataset_13.dat -R -T -e 100 -d 100 -p TCONS gffcompare_in4_gtf +# gffcompare v0.11.2 | Command line was: +#gffcompare -r ref_annotation -e 100 -d 100 -p TCONS gffcompare_in1_gtf gffcompare_in2_gtf # -#= Summary for dataset: gffcompare_in4_gtf -# Query mRNAs : 35 in 29 loci (15 multi-exon transcripts) -# (3 multi-transcript loci, ~1.2 transcripts per locus) -# Reference mRNAs : 20 in 7 loci (19 multi-exon) -# Super-loci w/ reference transcripts: 6 +#= Summary for dataset: gffcompare_in1_gtf +# Query mRNAs : 5 in 5 loci (0 multi-exon transcripts) +# (0 multi-transcript loci, ~1.0 transcripts per locus) +# Reference mRNAs : 1 in 1 loci (0 multi-exon) +# Super-loci w/ reference transcripts: 1 #-----------------| Sensitivity | Precision | - Base level: 72.6 | 60.7 | - Exon level: 80.0 | 55.7 | - Intron level: 81.2 | 64.4 | -Intron chain level: 10.5 | 13.3 | - Transcript level: 10.0 | 5.7 | - Locus level: 28.6 | 6.9 | + Base level: 94.7 | 42.9 | + Exon level: 100.0 | 40.0 | + Transcript level: 0.0 | 0.0 | + Locus level: 0.0 | 0.0 | + + Matching intron chains: 0 + Matching transcripts: 0 + Matching loci: 0 + + Missed exons: 0/1 ( 0.0%) + Novel exons: 3/5 ( 60.0%) + Missed loci: 0/1 ( 0.0%) + Novel loci: 3/5 ( 60.0%) - Matching intron chains: 2 - Matching transcripts: 2 - Matching loci: 2 +#= Summary for dataset: gffcompare_in2_gtf +# Query mRNAs : 4 in 4 loci (0 multi-exon transcripts) +# (0 multi-transcript loci, ~1.0 transcripts per locus) +# Reference mRNAs : 1 in 1 loci (0 multi-exon) +# Super-loci w/ reference transcripts: 1 +#-----------------| Sensitivity | Precision | + Base level: 31.6 | 18.2 | + Exon level: 100.0 | 25.0 | + Transcript level: 0.0 | 0.0 | + Locus level: 0.0 | 0.0 | - Missed exons: 3/85 ( 3.5%) - Novel exons: 46/122 ( 37.7%) - Missed introns: 11/69 ( 15.9%) - Novel introns: 28/87 ( 32.2%) - Missed loci: 0/7 ( 0.0%) - Novel loci: 15/29 ( 51.7%) + Matching intron chains: 0 + Matching transcripts: 0 + Matching loci: 0 - Total union super-loci across all input datasets: 21 -35 out of 35 consensus transcripts written in gffcmp.annotated.gtf (0 discarded as redundant) + Missed exons: 0/1 ( 0.0%) + Novel exons: 3/4 ( 75.0%) + Missed loci: 0/1 ( 0.0%) + Novel loci: 3/4 ( 75.0%) + + Total union super-loci across all input datasets: 6 + (0 multi-transcript, ~1.3 transcripts per locus) +8 out of 8 consensus transcripts written in gffcmp.combined.gtf (0 discarded as redundant)