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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit 8e8c67f4aa5ab37fc28c512b4e9e7f26a2d1e604
| author | iuc |
|---|---|
| date | Fri, 04 Oct 2024 08:47:42 +0000 |
| parents | f99dd58de04f |
| children |
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# gffcompare v0.12.6 | Command line was: #gffcompare -V -r reference_annotation -R --strict-match -e 100 -T -d 100 -p TCONS gffcompare_in4_gtf # #= Summary for dataset: gffcompare_in4_gtf # Query mRNAs : 35 in 29 loci (15 multi-exon transcripts) # (3 multi-transcript loci, ~1.2 transcripts per locus) # Reference mRNAs : 35 in 29 loci (15 multi-exon) # Super-loci w/ reference transcripts: 29 #-----------------| Sensitivity | Precision | Base level: 100.0 | 100.0 | Exon level: 100.0 | 100.0 | Intron level: 100.0 | 100.0 | Intron chain level: 100.0 | 100.0 | Transcript level: 100.0 | 100.0 | Locus level: 100.0 | 100.0 | Matching intron chains: 15 Matching transcripts: 35 Matching loci: 29 Missed exons: 0/122 ( 0.0%) Novel exons: 0/122 ( 0.0%) Missed introns: 0/87 ( 0.0%) Novel introns: 0/87 ( 0.0%) Missed loci: 0/29 ( 0.0%) Novel loci: 0/29 ( 0.0%) Total union super-loci across all input datasets: 29 35 out of 35 consensus transcripts written in gffcmp.annotated.gtf (0 discarded as redundant)