Mercurial > repos > iuc > gtdbtk_classify_wf
changeset 1:dbf1798c0dcc draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 1dddd355fe97cb9d6bb37f93b98f3402184b4320
| author | iuc |
|---|---|
| date | Thu, 16 Feb 2023 23:35:55 +0000 |
| parents | c4db8c4de66f |
| children | 6501b5b33988 |
| files | gtdbtk_classify_wf.xml macros.xml |
| diffstat | 2 files changed, 6 insertions(+), 2 deletions(-) [+] |
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--- a/gtdbtk_classify_wf.xml Tue Dec 13 09:48:28 2022 +0000 +++ b/gtdbtk_classify_wf.xml Thu Feb 16 23:35:55 2023 +0000 @@ -27,13 +27,17 @@ --min_perc_aa $advanced.min_perc_aa $advanced.force --min_af $advanced.min_af + +## Required unless mash_db is available: +--skip_ani_screen + #if str($advanced.output_process_log) == 'yes': && cat output_dir/gtdbtk.warnings.log output_dir/gtdbtk.log > '$process_log' #end if ]]></command> <inputs> <param name="input" type="data" format="fasta,fasta.gz" multiple="true" label="Fasta (Genome) files"/> - <param name="gtdbtk_db" type="select" label="GTDB-Tk database"> + <param name="gtdbtk_db" type="select" label="GTDB-Tk database" help="This version of GTDB-Tk required GTDB version R207_v2. Please contact your service administrator if this version is not available to select."> <options from_data_table="gtdbtk_database"> <validator type="no_options" message="No locally cached GTDB-Tk database is available"/> </options>
--- a/macros.xml Tue Dec 13 09:48:28 2022 +0000 +++ b/macros.xml Thu Feb 16 23:35:55 2023 +0000 @@ -1,5 +1,5 @@ <macros> - <token name="@TOOL_VERSION@">1.7.0</token> + <token name="@TOOL_VERSION@">2.2.2</token> <token name="@VERSION_SUFFIX@">0</token> <token name="@PROFILE@">20.09</token> <xml name="requirements">