Mercurial > repos > iuc > heinz
annotate visualization.xml @ 3:2b80a2596064 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit 8007f71281553ddfa45e6f8e1172952d956bb000"
author | iuc |
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date | Thu, 11 Jun 2020 07:18:17 -0400 |
parents | 704c401e0afb |
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704c401e0afb
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit 392f981f8dd08fb4b98526cba17074736ff15b38"
iuc
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1 <tool id="heinz_visualization" name="Visualize" version="0.1.1"> |
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e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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2 <description>the optimal scoring subnetwork</description> |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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3 <requirements> |
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704c401e0afb
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit 392f981f8dd08fb4b98526cba17074736ff15b38"
iuc
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4 <requirement type="package" version="2.42.3">graphviz</requirement> |
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e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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5 <requirement type="package" version="0.4.10">py-graphviz</requirement> |
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704c401e0afb
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit 392f981f8dd08fb4b98526cba17074736ff15b38"
iuc
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6 <requirement type="package" version="1">fonts-conda-ecosystem</requirement> |
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e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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7 </requirements> |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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8 <command detect_errors="aggressive"><![CDATA[ |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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9 python '$__tool_directory__/visualization.py' -i '$subnetwork' -o $visualization |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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10 ]]></command> |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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11 <inputs> |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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12 <param type="data" name="subnetwork" format="txt" label="Heinz output file" |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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13 help='Output file of the tool "Identify optimal scoring subnetwork"'/> |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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14 </inputs> |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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15 <outputs> |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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16 <data name="visualization" format="pdf" label="${tool.name} on ${on_string}: Heinz visualization" /> |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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17 </outputs> |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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18 <tests> |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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19 <test> |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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20 <param name="subnetwork" value="Heinz_output.txt" /> |
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704c401e0afb
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit 392f981f8dd08fb4b98526cba17074736ff15b38"
iuc
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21 <output name="visualization" file="heinz_graph.pdf" compare="sim_size" delta="10000" /> |
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e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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22 </test> |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
parents:
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23 </tests> |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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24 <help><![CDATA[ |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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25 This tool provides a simple visualisation of the raw output of the Heinz Galaxy tool |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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26 and saves the output as PDF. |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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27 |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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28 Heinz output file: output file of the tool "Identify optimal scoring subnetwork". |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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29 ]]></help> |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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30 <citations> |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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31 <citation type="doi">10.1093/bioinformatics/btn161</citation> |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
parents:
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32 <citation type="doi">10.1093/bioinformatics/btg148</citation> |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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33 </citations> |
e41ec5af7472
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
iuc
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34 </tool> |