Mercurial > repos > iuc > heinz
view visualization.xml @ 2:704c401e0afb draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit 392f981f8dd08fb4b98526cba17074736ff15b38"
author | iuc |
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date | Thu, 23 Jan 2020 14:07:54 -0500 |
parents | e41ec5af7472 |
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<tool id="heinz_visualization" name="Visualize" version="0.1.1"> <description>the optimal scoring subnetwork</description> <requirements> <requirement type="package" version="2.42.3">graphviz</requirement> <requirement type="package" version="0.4.10">py-graphviz</requirement> <requirement type="package" version="1">fonts-conda-ecosystem</requirement> </requirements> <command detect_errors="aggressive"><![CDATA[ python '$__tool_directory__/visualization.py' -i '$subnetwork' -o $visualization ]]></command> <inputs> <param type="data" name="subnetwork" format="txt" label="Heinz output file" help='Output file of the tool "Identify optimal scoring subnetwork"'/> </inputs> <outputs> <data name="visualization" format="pdf" label="${tool.name} on ${on_string}: Heinz visualization" /> </outputs> <tests> <test> <param name="subnetwork" value="Heinz_output.txt" /> <output name="visualization" file="heinz_graph.pdf" compare="sim_size" delta="10000" /> </test> </tests> <help><![CDATA[ This tool provides a simple visualisation of the raw output of the Heinz Galaxy tool and saves the output as PDF. Heinz output file: output file of the tool "Identify optimal scoring subnetwork". ]]></help> <citations> <citation type="doi">10.1093/bioinformatics/btn161</citation> <citation type="doi">10.1093/bioinformatics/btg148</citation> </citations> </tool>