Mercurial > repos > iuc > heinz
comparison visualization.xml @ 2:704c401e0afb draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit 392f981f8dd08fb4b98526cba17074736ff15b38"
| author | iuc |
|---|---|
| date | Thu, 23 Jan 2020 14:07:54 -0500 |
| parents | e41ec5af7472 |
| children |
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| 1:5f589c91566e | 2:704c401e0afb |
|---|---|
| 1 <tool id="heinz_visualization" name="Visualize" version="0.1.0"> | 1 <tool id="heinz_visualization" name="Visualize" version="0.1.1"> |
| 2 <description>the optimal scoring subnetwork</description> | 2 <description>the optimal scoring subnetwork</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="2.38.0">graphviz</requirement> | 4 <requirement type="package" version="2.42.3">graphviz</requirement> |
| 5 <requirement type="package" version="0.4.10">py-graphviz</requirement> | 5 <requirement type="package" version="0.4.10">py-graphviz</requirement> |
| 6 <requirement type="package" version="1">fonts-conda-ecosystem</requirement> | |
| 6 </requirements> | 7 </requirements> |
| 7 <command detect_errors="aggressive"><![CDATA[ | 8 <command detect_errors="aggressive"><![CDATA[ |
| 8 python '$__tool_directory__/visualization.py' -i '$subnetwork' -o $visualization | 9 python '$__tool_directory__/visualization.py' -i '$subnetwork' -o $visualization |
| 9 ]]></command> | 10 ]]></command> |
| 10 <inputs> | 11 <inputs> |
| 15 <data name="visualization" format="pdf" label="${tool.name} on ${on_string}: Heinz visualization" /> | 16 <data name="visualization" format="pdf" label="${tool.name} on ${on_string}: Heinz visualization" /> |
| 16 </outputs> | 17 </outputs> |
| 17 <tests> | 18 <tests> |
| 18 <test> | 19 <test> |
| 19 <param name="subnetwork" value="Heinz_output.txt" /> | 20 <param name="subnetwork" value="Heinz_output.txt" /> |
| 20 <output name="visualization" file="heinz_graph.pdf" compare="sim_size" delta="2000" /> | 21 <output name="visualization" file="heinz_graph.pdf" compare="sim_size" delta="10000" /> |
| 21 </test> | 22 </test> |
| 22 </tests> | 23 </tests> |
| 23 <help><![CDATA[ | 24 <help><![CDATA[ |
| 24 This tool provides a simple visualisation of the raw output of the Heinz Galaxy tool | 25 This tool provides a simple visualisation of the raw output of the Heinz Galaxy tool |
| 25 and saves the output as PDF. | 26 and saves the output as PDF. |