Mercurial > repos > iuc > heinz
comparison visualization.xml @ 0:e41ec5af7472 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
author | iuc |
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date | Thu, 02 Aug 2018 11:57:44 -0400 |
parents | |
children | 704c401e0afb |
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1 <tool id="heinz_visualization" name="Visualize" version="0.1.0"> | |
2 <description>the optimal scoring subnetwork</description> | |
3 <requirements> | |
4 <requirement type="package" version="2.38.0">graphviz</requirement> | |
5 <requirement type="package" version="0.4.10">py-graphviz</requirement> | |
6 </requirements> | |
7 <command detect_errors="aggressive"><![CDATA[ | |
8 python '$__tool_directory__/visualization.py' -i '$subnetwork' -o $visualization | |
9 ]]></command> | |
10 <inputs> | |
11 <param type="data" name="subnetwork" format="txt" label="Heinz output file" | |
12 help='Output file of the tool "Identify optimal scoring subnetwork"'/> | |
13 </inputs> | |
14 <outputs> | |
15 <data name="visualization" format="pdf" label="${tool.name} on ${on_string}: Heinz visualization" /> | |
16 </outputs> | |
17 <tests> | |
18 <test> | |
19 <param name="subnetwork" value="Heinz_output.txt" /> | |
20 <output name="visualization" file="heinz_graph.pdf" compare="sim_size" delta="2000" /> | |
21 </test> | |
22 </tests> | |
23 <help><![CDATA[ | |
24 This tool provides a simple visualisation of the raw output of the Heinz Galaxy tool | |
25 and saves the output as PDF. | |
26 | |
27 Heinz output file: output file of the tool "Identify optimal scoring subnetwork". | |
28 ]]></help> | |
29 <citations> | |
30 <citation type="doi">10.1093/bioinformatics/btn161</citation> | |
31 <citation type="doi">10.1093/bioinformatics/btg148</citation> | |
32 </citations> | |
33 </tool> |