diff visualization.xml @ 0:e41ec5af7472 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/visualization.xml	Thu Aug 02 11:57:44 2018 -0400
@@ -0,0 +1,33 @@
+<tool id="heinz_visualization" name="Visualize" version="0.1.0">
+    <description>the optimal scoring subnetwork</description>
+    <requirements>
+        <requirement type="package" version="2.38.0">graphviz</requirement>
+        <requirement type="package" version="0.4.10">py-graphviz</requirement>
+    </requirements>
+    <command detect_errors="aggressive"><![CDATA[
+python '$__tool_directory__/visualization.py' -i '$subnetwork' -o $visualization
+    ]]></command>
+    <inputs>
+        <param type="data" name="subnetwork" format="txt" label="Heinz output file"
+        help='Output file of the tool "Identify optimal scoring subnetwork"'/>
+    </inputs>
+    <outputs>
+        <data name="visualization" format="pdf" label="${tool.name} on ${on_string}: Heinz visualization" />
+    </outputs>
+    <tests>
+      <test>
+        <param name="subnetwork" value="Heinz_output.txt" />
+        <output name="visualization" file="heinz_graph.pdf" compare="sim_size" delta="2000" />
+      </test>
+    </tests>
+    <help><![CDATA[
+This tool provides a simple visualisation of the raw output of the Heinz Galaxy tool
+and saves the output as PDF.
+
+Heinz output file: output file of the tool "Identify optimal scoring subnetwork".
+    ]]></help>
+    <citations>
+        <citation type="doi">10.1093/bioinformatics/btn161</citation>
+        <citation type="doi">10.1093/bioinformatics/btg148</citation>
+    </citations>
+</tool>