Mercurial > repos > iuc > hisat2
changeset 5:1eb21dccc2fa draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hisat2 commit d12a2e9dd273b4c23db48bbb747f32700887710e
| author | iuc |
|---|---|
| date | Thu, 02 Jun 2016 11:02:23 -0400 |
| parents | 2d449a1bb5ab |
| children | 5f4da9ec47c7 |
| files | hisat2.xml |
| diffstat | 1 files changed, 2 insertions(+), 1 deletions(-) [+] |
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--- a/hisat2.xml Tue Apr 19 18:09:15 2016 -0400 +++ b/hisat2.xml Thu Jun 02 11:02:23 2016 -0400 @@ -7,6 +7,7 @@ <requirements> <!-- Conda dependency --> <requirement type="package" version="2.0.3">hisat2</requirement> + <requirement type="package" version="2.0.3">hisat</requirement> <requirement type="package" version="1.2">samtools</requirement> </requirements> <stdio> @@ -19,7 +20,7 @@ <![CDATA[ #if str($spliced_options.spliced_options_selector) == "advanced" and str($spliced_options.known_splice_gtf) != 'None': ln -s "${spliced_options.known_splice_gtf}" splice_sites.gtf && - extract_splice_sites.py splice_sites.gtf > splice_sites.txt && + hisat2_extract_splice_sites.py splice_sites.gtf > splice_sites.txt && #end if #if $reference_genome.reference_genome_source == "history": ln -s "$reference_genome.history_item" genome.fa &&