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changeset 24:61ee47027bd3 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hisat2 commit 67cc9b86dcb40c7691cc85b77428117be25d6046
author iuc
date Thu, 15 Nov 2018 10:31:25 -0500
parents 6daca6da3059
children 3fb01a8c902d
files hisat2.xml
diffstat 1 files changed, 4 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/hisat2.xml	Wed Sep 05 09:04:02 2018 -0400
+++ b/hisat2.xml	Thu Nov 15 10:31:25 2018 -0500
@@ -290,7 +290,9 @@
 ## Reporting options
 
 #if str($adv.reporting_options.reporting_options_selector) == "advanced":
-    -k ${adv.reporting_options.max_primary}
+    #if str($adv.reporting_options.max_primary) != '':
+        -k ${adv.reporting_options.max_primary}
+    #end if
 #end if
 
 
@@ -613,6 +615,7 @@
             <param name="history_item" ftype="fasta" value="phiX.fa" />
             <param name="input_1" ftype="fastqsanger" value="hisat_input_1_forward.fastq" />
             <param name="input_2" ftype="fastqsanger" value="hisat_input_1_reverse.fastq" />
+            <param name="adv|reporting_options|reporting_options_selector" value="advanced"/>
             <output name="output_alignments" file="hisat_output_1.bam" ftype="bam" lines_diff="2" />
         </test>
         <!-- Ensure advanced scoring options work -->