Mercurial > repos > iuc > hivclustering
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hivclustering/ commit fb9914c1e5dc3555b3d57926259d76dd9a624039
author | iuc |
---|---|
date | Sat, 05 Oct 2024 16:40:47 +0000 |
parents | ef842bb94d1f |
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{ "Cluster sizes": [ 4, 3 ], "Degrees": { "Distribution": [ 2, 3, 2 ], "Model": "Waring", "fitted": [ 0.5000721527871422, 0.24996196530120798, 0.12496295268484243 ], "rho": 3287.8967604237114, "rho CI": [ 698.4419473417928, 10000.0 ] }, "Directed Edges": { "Count": 0, "Reasons for unresolved directions": { "Missing dates": 7 } }, "Edges": [ { "attributes": [ "BULK" ], "directed": false, "length": 0.045156, "removed": false, "sequences": [ "B_FR_83_HXB2_ACC_K03455_5", "B_US_83_RF_ACC_M17451" ], "source": 2, "support": 0.0, "target": 3 }, { "attributes": [ "BULK" ], "directed": false, "length": 0.0296218, "removed": false, "sequences": [ "B_FR_83_HXB2_ACC_K03455_5", "B_US_86_JRFL_ACC_U63632" ], "source": 2, "support": 0.0, "target": 0 }, { "attributes": [ "BULK" ], "directed": false, "length": 0.0327566, "removed": false, "sequences": [ "B_FR_83_HXB2_ACC_K03455_5", "B_US_90_WEAU160_ACC_U21135" ], "source": 2, "support": 0.0, "target": 1 }, { "attributes": [ "BULK" ], "directed": false, "length": 0.048328, "removed": false, "sequences": [ "B_US_83_RF_ACC_M17451", "B_US_86_JRFL_ACC_U63632" ], "source": 3, "support": 0.0, "target": 0 }, { "attributes": [ "BULK" ], "directed": false, "length": 0.0408994, "removed": false, "sequences": [ "B_US_86_JRFL_ACC_U63632", "B_US_90_WEAU160_ACC_U21135" ], "source": 0, "support": 0.0, "target": 1 }, { "attributes": [ "BULK" ], "directed": false, "length": 0.0287246, "removed": false, "sequences": [ "D_CD_83_ELI_ACC_K03454_7", "D_CD_83_NDK_ACC_M27323" ], "source": 6, "support": 0.0, "target": 4 }, { "attributes": [ "BULK" ], "directed": false, "length": 0.0491974, "removed": false, "sequences": [ "D_CD_83_NDK_ACC_M27323", "D_CD_84_84ZR085_ACC_U88822" ], "source": 4, "support": 0.0, "target": 5 } ], "HIV Stages": { "Unknown": 7 }, "Multiple sequences": { "Followup, days": null, "Subjects with": 0 }, "Network Summary": { "Clusters": 2, "Edges": 7, "Nodes": 7, "Sequences used to make links": 7 }, "Nodes": [ { "attributes": [], "baseline": null, "cluster": 1, "edi": null, "id": "B_FR_83_HXB2_ACC_K03455_5" }, { "attributes": [], "baseline": null, "cluster": 1, "edi": null, "id": "B_US_83_RF_ACC_M17451" }, { "attributes": [], "baseline": null, "cluster": 1, "edi": null, "id": "B_US_86_JRFL_ACC_U63632" }, { "attributes": [], "baseline": null, "cluster": 1, "edi": null, "id": "B_US_90_WEAU160_ACC_U21135" }, { "attributes": [], "baseline": null, "cluster": 2, "edi": null, "id": "D_CD_83_ELI_ACC_K03454_7" }, { "attributes": [], "baseline": null, "cluster": 2, "edi": null, "id": "D_CD_83_NDK_ACC_M27323" }, { "attributes": [], "baseline": null, "cluster": 2, "edi": null, "id": "D_CD_84_84ZR085_ACC_U88822" } ], "Settings": { "contaminants": null, "edge-filtering": null, "threshold": 0.8 } }