view test-data/hivclustering-out1.json @ 0:ef842bb94d1f draft default tip

planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c

{
    "Cluster sizes": [
        4,
        3
    ],
    "Degrees": {
        "Distribution": [
            2,
            3,
            2
        ],
        "Model": "Waring",
        "fitted": [
            0.5000721527871422,
            0.24996196530120798,
            0.12496295268484243
        ],
        "rho": 3287.8967604237114,
        "rho CI": [
            698.4419473417928,
            10000.0
        ]
    },
    "Directed Edges": {
        "Count": 0,
        "Reasons for unresolved directions": {
            "Missing dates": 7
        }
    },
    "Edges": [
        {
            "attributes": [
                "BULK"
            ],
            "directed": false,
            "length": 0.045156,
            "removed": false,
            "sequences": [
                "B_FR_83_HXB2_ACC_K03455_5",
                "B_US_83_RF_ACC_M17451"
            ],
            "source": 2,
            "support": 0.0,
            "target": 3
        },
        {
            "attributes": [
                "BULK"
            ],
            "directed": false,
            "length": 0.0296218,
            "removed": false,
            "sequences": [
                "B_FR_83_HXB2_ACC_K03455_5",
                "B_US_86_JRFL_ACC_U63632"
            ],
            "source": 2,
            "support": 0.0,
            "target": 0
        },
        {
            "attributes": [
                "BULK"
            ],
            "directed": false,
            "length": 0.0327566,
            "removed": false,
            "sequences": [
                "B_FR_83_HXB2_ACC_K03455_5",
                "B_US_90_WEAU160_ACC_U21135"
            ],
            "source": 2,
            "support": 0.0,
            "target": 1
        },
        {
            "attributes": [
                "BULK"
            ],
            "directed": false,
            "length": 0.048328,
            "removed": false,
            "sequences": [
                "B_US_83_RF_ACC_M17451",
                "B_US_86_JRFL_ACC_U63632"
            ],
            "source": 3,
            "support": 0.0,
            "target": 0
        },
        {
            "attributes": [
                "BULK"
            ],
            "directed": false,
            "length": 0.0408994,
            "removed": false,
            "sequences": [
                "B_US_86_JRFL_ACC_U63632",
                "B_US_90_WEAU160_ACC_U21135"
            ],
            "source": 0,
            "support": 0.0,
            "target": 1
        },
        {
            "attributes": [
                "BULK"
            ],
            "directed": false,
            "length": 0.0287246,
            "removed": false,
            "sequences": [
                "D_CD_83_ELI_ACC_K03454_7",
                "D_CD_83_NDK_ACC_M27323"
            ],
            "source": 6,
            "support": 0.0,
            "target": 4
        },
        {
            "attributes": [
                "BULK"
            ],
            "directed": false,
            "length": 0.0491974,
            "removed": false,
            "sequences": [
                "D_CD_83_NDK_ACC_M27323",
                "D_CD_84_84ZR085_ACC_U88822"
            ],
            "source": 4,
            "support": 0.0,
            "target": 5
        }
    ],
    "HIV Stages": {
        "Unknown": 7
    },
    "Multiple sequences": {
        "Followup, days": null,
        "Subjects with": 0
    },
    "Network Summary": {
        "Clusters": 2,
        "Edges": 7,
        "Nodes": 7,
        "Sequences used to make links": 7
    },
    "Nodes": [
        {
            "attributes": [],
            "baseline": null,
            "cluster": 1,
            "edi": null,
            "id": "B_FR_83_HXB2_ACC_K03455_5"
        },
        {
            "attributes": [],
            "baseline": null,
            "cluster": 1,
            "edi": null,
            "id": "B_US_83_RF_ACC_M17451"
        },
        {
            "attributes": [],
            "baseline": null,
            "cluster": 1,
            "edi": null,
            "id": "B_US_86_JRFL_ACC_U63632"
        },
        {
            "attributes": [],
            "baseline": null,
            "cluster": 1,
            "edi": null,
            "id": "B_US_90_WEAU160_ACC_U21135"
        },
        {
            "attributes": [],
            "baseline": null,
            "cluster": 2,
            "edi": null,
            "id": "D_CD_83_ELI_ACC_K03454_7"
        },
        {
            "attributes": [],
            "baseline": null,
            "cluster": 2,
            "edi": null,
            "id": "D_CD_83_NDK_ACC_M27323"
        },
        {
            "attributes": [],
            "baseline": null,
            "cluster": 2,
            "edi": null,
            "id": "D_CD_84_84ZR085_ACC_U88822"
        }
    ],
    "Settings": {
        "contaminants": null,
        "edge-filtering": null,
        "threshold": 0.8
    }
}