Mercurial > repos > iuc > hmmer3
changeset 1:b5066aa77fea draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit f7d83adb11624763b9b113f938a1d5f311c8f9fa-dirty
| author | iuc |
|---|---|
| date | Sat, 19 Sep 2015 17:05:45 -0400 |
| parents | 62479bdcc059 |
| children | 54b6b4d0613a |
| files | hmmconvert.xml hmmfetch.xml macros.xml |
| diffstat | 3 files changed, 7 insertions(+), 6 deletions(-) [+] |
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--- a/hmmconvert.xml Tue May 12 15:04:26 2015 -0400 +++ b/hmmconvert.xml Sat Sep 19 17:05:45 2015 -0400 @@ -20,10 +20,10 @@ </param> </inputs> <outputs> - <data format="hmmer3" name="output" label="$msafile.name"> + <data format="hmm3" name="output" label="$msafile.name"> <change_format> - <when input="format" value="-a" format="hmmer3"/> - <when input="format" value="-2" format="hmmer2"/> + <when input="format" value="-a" format="hmm3"/> + <when input="format" value="-2" format="hmm2"/> </change_format> </data> </outputs>
--- a/hmmfetch.xml Tue May 12 15:04:26 2015 -0400 +++ b/hmmfetch.xml Sat Sep 19 17:05:45 2015 -0400 @@ -15,7 +15,7 @@ <param name="keyfile" type="data" format="tabular,txt" label="List of HMM names to extract"/> </inputs> <outputs> - <data format="hmmer3" name="output" label="Selected HMM Models from $hmmfile.name"> + <data format="hmm3" name="output" label="Selected HMM Models from $hmmfile.name"> </data> </outputs> <tests>
--- a/macros.xml Tue May 12 15:04:26 2015 -0400 +++ b/macros.xml Sat Sep 19 17:05:45 2015 -0400 @@ -392,10 +392,11 @@ help="(--w_length)" optional="True" type="integer" /> </xml> <xml name="input_hmm"> - <param name="hmmfile" type="data" label="HMM model" format="hmmer2,hmmer3"/> + <param name="hmmfile" type="data" label="HMM model" format="hmm2,hmm3"/> </xml> <xml name="input_msa"> - <param name="msafile" type="data" label="MSA File" format="stockholm"/> + <param name="msafile" type="data" label="Multiple Sequence Alignment" format="stockholm,clustal,fasta" + help="in Stockholm, Clustal, or Fasta format. While this tool accepts fasta, please ensure that the sequences are not unaligned"/> </xml>