Mercurial > repos > iuc > hmmer_hmmconvert
diff test-data/jackhmmer.domtblout @ 5:8d5ec58d2172 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
| author | iuc |
|---|---|
| date | Tue, 16 Jun 2020 05:37:52 -0400 |
| parents | f92edeb5e4c4 |
| children | db8a5a3195e7 |
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--- a/test-data/jackhmmer.domtblout Mon Jun 11 15:52:53 2018 -0400 +++ b/test-data/jackhmmer.domtblout Tue Jun 16 05:37:52 2020 -0400 @@ -46,58 +46,58 @@ HBA4_SALIR - 142 sp|P02185|MYG_PHYCD - 154 5.3e-56 180.0 0.1 1 1 5.9e-56 5.9e-56 179.9 0.1 3 148 2 142 1 142 0.99 - MYG_MUSAN - 148 sp|P02185|MYG_PHYCD - 154 2.5e-54 174.6 0.4 1 1 2.8e-54 2.8e-54 174.5 0.4 7 154 2 148 1 148 0.99 - HBB2_TRICR - 145 sp|P02185|MYG_PHYCD - 154 2e-52 168.4 0.0 1 1 2.2e-52 2.2e-52 168.3 0.0 3 147 3 145 1 145 0.99 - -HBB_MANSP - 146 sp|P02024|HBB_GORGO - 147 3.6e-74 238.9 0.1 1 1 4e-74 4e-74 238.8 0.1 2 147 1 146 1 146 1.00 - -HBB_URSMA - 146 sp|P02024|HBB_GORGO - 147 1.7e-73 236.7 0.3 1 1 1.9e-73 1.9e-73 236.6 0.3 2 147 1 146 1 146 1.00 - -HBB_RABIT - 146 sp|P02024|HBB_GORGO - 147 2.2e-72 233.1 0.8 1 1 2.4e-72 2.4e-72 233.0 0.8 2 147 1 146 1 146 1.00 - -HBB_SUNMU - 146 sp|P02024|HBB_GORGO - 147 5.4e-72 231.8 0.1 1 1 6e-72 6e-72 231.7 0.1 2 147 1 146 1 146 1.00 - -HBB_CALAR - 146 sp|P02024|HBB_GORGO - 147 7e-72 231.5 0.2 1 1 7.7e-72 7.7e-72 231.3 0.2 2 147 1 146 1 146 1.00 - -HBB_COLLI - 146 sp|P02024|HBB_GORGO - 147 9.6e-72 231.0 0.0 1 1 1.1e-71 1.1e-71 230.9 0.0 2 147 1 146 1 146 1.00 - -HBB_TACAC - 146 sp|P02024|HBB_GORGO - 147 2.5e-71 229.7 0.4 1 1 2.8e-71 2.8e-71 229.6 0.4 2 147 1 146 1 146 1.00 - -HBE_PONPY - 146 sp|P02024|HBB_GORGO - 147 4.8e-71 228.8 0.4 1 1 5.3e-71 5.3e-71 228.6 0.4 2 147 1 146 1 146 1.00 - -HBB_EQUHE - 146 sp|P02024|HBB_GORGO - 147 5.1e-71 228.7 0.2 1 1 5.7e-71 5.7e-71 228.5 0.2 2 147 1 146 1 146 0.99 - -HBB_SPECI - 146 sp|P02024|HBB_GORGO - 147 1.3e-70 227.3 1.0 1 1 1.5e-70 1.5e-70 227.2 1.0 2 147 1 146 1 146 1.00 - -HBB_SPETO - 146 sp|P02024|HBB_GORGO - 147 2e-70 226.8 0.6 1 1 2.2e-70 2.2e-70 226.6 0.6 2 147 1 146 1 146 1.00 - -HBB_TRIIN - 146 sp|P02024|HBB_GORGO - 147 3.7e-70 225.9 0.1 1 1 4.1e-70 4.1e-70 225.8 0.1 2 147 1 146 1 146 1.00 - -HBB_ORNAN - 146 sp|P02024|HBB_GORGO - 147 4.1e-70 225.7 0.0 1 1 4.6e-70 4.6e-70 225.6 0.0 2 147 1 146 1 146 1.00 - -HBB_LARRI - 146 sp|P02024|HBB_GORGO - 147 5.7e-70 225.3 0.0 1 1 6.4e-70 6.4e-70 225.1 0.0 2 147 1 146 1 146 1.00 - -HBB_TUPGL - 146 sp|P02024|HBB_GORGO - 147 1.8e-68 220.5 0.0 1 1 1.9e-68 1.9e-68 220.3 0.0 2 147 1 146 1 146 1.00 - -HBB1_VAREX - 146 sp|P02024|HBB_GORGO - 147 1.5e-67 217.4 0.1 1 1 1.7e-67 1.7e-67 217.3 0.1 2 147 1 146 1 146 1.00 - -HBBL_RANCA - 146 sp|P02024|HBB_GORGO - 147 7.8e-64 205.4 0.3 1 1 8.7e-64 8.7e-64 205.2 0.3 2 147 1 146 1 146 1.00 - -HBA_MESAU - 141 sp|P02024|HBB_GORGO - 147 4.5e-63 202.9 0.3 1 1 5e-63 5e-63 202.8 0.3 4 146 2 140 1 141 0.99 - -HBB2_XENTR - 146 sp|P02024|HBB_GORGO - 147 2e-62 200.8 0.8 1 1 2.3e-62 2.3e-62 200.6 0.8 2 146 1 145 1 146 1.00 - -HBA_PONPY - 141 sp|P02024|HBB_GORGO - 147 4.6e-62 199.6 0.7 1 1 5e-62 5e-62 199.5 0.7 4 146 2 140 1 141 0.98 - -HBA_MACFA - 141 sp|P02024|HBB_GORGO - 147 8.7e-62 198.7 0.3 1 1 9.6e-62 9.6e-62 198.6 0.3 4 146 2 140 1 141 0.99 - -HBA_MACSI - 141 sp|P02024|HBB_GORGO - 147 1.3e-61 198.2 0.3 1 1 1.4e-61 1.4e-61 198.1 0.3 4 146 2 140 1 141 0.99 - -HBA_AILME - 141 sp|P02024|HBB_GORGO - 147 2.1e-61 197.5 0.1 1 1 2.4e-61 2.4e-61 197.3 0.1 4 146 2 140 1 141 0.99 - -HBA2_GALCR - 141 sp|P02024|HBB_GORGO - 147 6.6e-61 195.9 0.6 1 1 7.3e-61 7.3e-61 195.7 0.6 4 146 2 140 1 141 0.98 - -HBA_FRAPO - 141 sp|P02024|HBB_GORGO - 147 7.1e-61 195.8 0.4 1 1 7.8e-61 7.8e-61 195.7 0.4 4 146 2 140 1 141 0.98 - -HBA_PHACO - 141 sp|P02024|HBB_GORGO - 147 7.3e-61 195.7 0.4 1 1 8e-61 8e-61 195.6 0.4 4 146 2 140 1 141 0.99 - -HBA2_BOSMU - 141 sp|P02024|HBB_GORGO - 147 7.6e-61 195.7 0.4 1 1 8.3e-61 8.3e-61 195.6 0.4 4 146 2 140 1 141 0.99 - -HBA_ERIEU - 141 sp|P02024|HBB_GORGO - 147 2.4e-60 194.0 0.1 1 1 2.7e-60 2.7e-60 193.9 0.1 4 146 2 140 1 141 0.98 - -HBA_PROLO - 141 sp|P02024|HBB_GORGO - 147 3.3e-60 193.6 0.0 1 1 3.6e-60 3.6e-60 193.5 0.0 4 146 2 140 1 141 0.99 - -HBA_ANSSE - 141 sp|P02024|HBB_GORGO - 147 3.9e-60 193.4 0.4 1 1 4.3e-60 4.3e-60 193.2 0.4 4 146 2 140 1 141 0.99 - -HBA_PAGLA - 141 sp|P02024|HBB_GORGO - 147 4.1e-60 193.3 0.5 1 1 4.5e-60 4.5e-60 193.2 0.5 4 146 2 140 1 141 0.98 - -HBA_TRIOC - 141 sp|P02024|HBB_GORGO - 147 2.7e-59 190.7 0.5 1 1 2.9e-59 2.9e-59 190.5 0.5 4 146 2 140 1 141 0.98 - -HBAD_CHLME - 141 sp|P02024|HBB_GORGO - 147 6.3e-59 189.4 0.5 1 1 7e-59 7e-59 189.3 0.5 4 146 2 140 1 141 0.98 - -HBAZ_HORSE - 141 sp|P02024|HBB_GORGO - 147 7.5e-59 189.2 0.1 1 1 8.2e-59 8.2e-59 189.1 0.1 4 146 2 140 1 141 0.98 - -HBA_COLLI - 141 sp|P02024|HBB_GORGO - 147 1.6e-58 188.1 0.2 1 1 1.8e-58 1.8e-58 188.0 0.2 4 146 2 140 1 141 0.98 - -HBAD_PASMO - 141 sp|P02024|HBB_GORGO - 147 2e-58 187.8 0.1 1 1 2.2e-58 2.2e-58 187.7 0.1 4 146 2 140 1 141 0.98 - -MYG_SAISC - 153 sp|P02024|HBB_GORGO - 147 2.9e-57 184.1 1.0 1 1 3.2e-57 3.2e-57 183.9 1.0 4 146 2 146 1 147 0.98 - -MYG_LYCPI - 153 sp|P02024|HBB_GORGO - 147 3e-57 184.0 1.9 1 1 3.3e-57 3.3e-57 183.9 1.9 4 146 2 146 1 147 0.97 - -MYG_PROGU - 153 sp|P02024|HBB_GORGO - 147 8.3e-57 182.6 0.2 1 1 9.2e-57 9.2e-57 182.4 0.2 4 146 2 146 1 147 0.97 - -MYG_ESCGI - 153 sp|P02024|HBB_GORGO - 147 8.8e-57 182.5 2.3 1 1 9.7e-57 9.7e-57 182.4 2.3 4 146 2 146 1 147 0.97 - -MYG_HORSE - 153 sp|P02024|HBB_GORGO - 147 2.5e-56 181.0 1.0 1 1 2.7e-56 2.7e-56 180.9 1.0 4 146 2 146 1 147 0.97 - -MYG_MOUSE - 153 sp|P02024|HBB_GORGO - 147 4.7e-56 180.1 0.3 1 1 5.2e-56 5.2e-56 180.0 0.3 4 146 2 146 1 147 0.97 - -HBA4_SALIR - 142 sp|P02024|HBB_GORGO - 147 7.5e-56 179.5 0.1 1 1 8.3e-56 8.3e-56 179.3 0.1 4 146 2 141 1 142 0.98 - -HBB2_TRICR - 145 sp|P02024|HBB_GORGO - 147 2.7e-55 177.7 0.0 1 1 3e-55 3e-55 177.5 0.0 2 146 1 145 1 145 1.00 - -MYG_MUSAN - 148 sp|P02024|HBB_GORGO - 147 4.6e-45 144.5 0.3 1 1 5.1e-45 5.1e-45 144.3 0.3 8 146 2 141 1 142 0.96 - +HBB_MANSP - 146 sp|P02024|HBB_GORGO - 147 2.3e-75 242.8 0.1 1 1 2.6e-75 2.6e-75 242.6 0.1 2 147 1 146 1 146 1.00 - +HBB_URSMA - 146 sp|P02024|HBB_GORGO - 147 1.1e-74 240.6 0.3 1 1 1.2e-74 1.2e-74 240.5 0.3 2 147 1 146 1 146 1.00 - +HBB_RABIT - 146 sp|P02024|HBB_GORGO - 147 1.4e-73 237.0 0.9 1 1 1.5e-73 1.5e-73 236.9 0.9 2 147 1 146 1 146 1.00 - +HBB_CALAR - 146 sp|P02024|HBB_GORGO - 147 4.1e-73 235.5 0.2 1 1 4.5e-73 4.5e-73 235.4 0.2 2 147 1 146 1 146 1.00 - +HBB_SUNMU - 146 sp|P02024|HBB_GORGO - 147 4.2e-73 235.4 0.1 1 1 4.7e-73 4.7e-73 235.3 0.1 2 147 1 146 1 146 1.00 - +HBB_COLLI - 146 sp|P02024|HBB_GORGO - 147 7.8e-73 234.6 0.0 1 1 8.7e-73 8.7e-73 234.4 0.0 2 147 1 146 1 146 1.00 - +HBB_TACAC - 146 sp|P02024|HBB_GORGO - 147 1.9e-72 233.3 0.4 1 1 2.1e-72 2.1e-72 233.2 0.4 2 147 1 146 1 146 1.00 - +HBE_PONPY - 146 sp|P02024|HBB_GORGO - 147 3.1e-72 232.6 0.4 1 1 3.4e-72 3.4e-72 232.5 0.4 2 147 1 146 1 146 1.00 - +HBB_EQUHE - 146 sp|P02024|HBB_GORGO - 147 3.5e-72 232.5 0.2 1 1 3.8e-72 3.8e-72 232.3 0.2 2 147 1 146 1 146 0.99 - +HBB_SPECI - 146 sp|P02024|HBB_GORGO - 147 1.1e-71 230.8 1.0 1 1 1.3e-71 1.3e-71 230.7 1.0 2 147 1 146 1 146 1.00 - +HBB_SPETO - 146 sp|P02024|HBB_GORGO - 147 1.6e-71 230.3 0.6 1 1 1.7e-71 1.7e-71 230.2 0.6 2 147 1 146 1 146 1.00 - +HBB_TRIIN - 146 sp|P02024|HBB_GORGO - 147 2.6e-71 229.6 0.1 1 1 2.9e-71 2.9e-71 229.5 0.1 2 147 1 146 1 146 1.00 - +HBB_ORNAN - 146 sp|P02024|HBB_GORGO - 147 2.9e-71 229.5 0.0 1 1 3.2e-71 3.2e-71 229.4 0.0 2 147 1 146 1 146 1.00 - +HBB_LARRI - 146 sp|P02024|HBB_GORGO - 147 5.2e-71 228.7 0.0 1 1 5.7e-71 5.7e-71 228.5 0.0 2 147 1 146 1 146 1.00 - +HBB_TUPGL - 146 sp|P02024|HBB_GORGO - 147 1.1e-69 224.3 0.0 1 1 1.3e-69 1.3e-69 224.2 0.0 2 147 1 146 1 146 1.00 - +HBB1_VAREX - 146 sp|P02024|HBB_GORGO - 147 1.5e-68 220.7 0.1 1 1 1.6e-68 1.6e-68 220.5 0.1 2 147 1 146 1 146 1.00 - +HBBL_RANCA - 146 sp|P02024|HBB_GORGO - 147 7.6e-65 208.7 0.3 1 1 8.5e-65 8.5e-65 208.5 0.3 2 147 1 146 1 146 1.00 - +HBB2_XENTR - 146 sp|P02024|HBB_GORGO - 147 2.5e-63 203.7 0.9 1 1 2.8e-63 2.8e-63 203.6 0.9 2 146 1 145 1 146 1.00 - +HBA_MESAU - 141 sp|P02024|HBB_GORGO - 147 6.9e-63 202.3 0.3 1 1 7.5e-63 7.5e-63 202.2 0.3 4 146 2 140 1 141 0.99 - +HBA_PONPY - 141 sp|P02024|HBB_GORGO - 147 1.1e-61 198.4 0.7 1 1 1.2e-61 1.2e-61 198.3 0.7 4 146 2 140 1 141 0.98 - +HBA_MACFA - 141 sp|P02024|HBB_GORGO - 147 1.8e-61 197.7 0.3 1 1 1.9e-61 1.9e-61 197.6 0.3 4 146 2 140 1 141 0.99 - +HBA_MACSI - 141 sp|P02024|HBB_GORGO - 147 2.6e-61 197.2 0.3 1 1 2.8e-61 2.8e-61 197.1 0.3 4 146 2 140 1 141 0.99 - +HBA_AILME - 141 sp|P02024|HBB_GORGO - 147 3.6e-61 196.8 0.1 1 1 3.9e-61 3.9e-61 196.6 0.1 4 146 2 140 1 141 0.99 - +HBA_PHACO - 141 sp|P02024|HBB_GORGO - 147 1.2e-60 195.1 0.4 1 1 1.3e-60 1.3e-60 194.9 0.4 4 146 2 140 1 141 0.99 - +HBA2_BOSMU - 141 sp|P02024|HBB_GORGO - 147 1.2e-60 195.1 0.4 1 1 1.3e-60 1.3e-60 194.9 0.4 4 146 2 140 1 141 0.99 - +HBA_FRAPO - 141 sp|P02024|HBB_GORGO - 147 1.2e-60 195.0 0.4 1 1 1.4e-60 1.4e-60 194.9 0.4 4 146 2 140 1 141 0.98 - +HBA2_GALCR - 141 sp|P02024|HBB_GORGO - 147 1.4e-60 194.8 0.6 1 1 1.6e-60 1.6e-60 194.7 0.6 4 146 2 140 1 141 0.98 - +HBA_ERIEU - 141 sp|P02024|HBB_GORGO - 147 4.5e-60 193.2 0.1 1 1 4.9e-60 4.9e-60 193.1 0.1 4 146 2 140 1 141 0.98 - +HBA_PROLO - 141 sp|P02024|HBB_GORGO - 147 5.1e-60 193.0 0.0 1 1 5.6e-60 5.6e-60 192.9 0.0 4 146 2 140 1 141 0.99 - +HBA_ANSSE - 141 sp|P02024|HBB_GORGO - 147 7.4e-60 192.5 0.4 1 1 8.1e-60 8.1e-60 192.3 0.4 4 146 2 140 1 141 0.99 - +HBA_PAGLA - 141 sp|P02024|HBB_GORGO - 147 7.4e-60 192.5 0.5 1 1 8.1e-60 8.1e-60 192.3 0.5 4 146 2 140 1 141 0.98 - +HBA_TRIOC - 141 sp|P02024|HBB_GORGO - 147 4.5e-59 189.9 0.5 1 1 5e-59 5e-59 189.8 0.5 4 146 2 140 1 141 0.98 - +HBAD_CHLME - 141 sp|P02024|HBB_GORGO - 147 6e-59 189.5 0.5 1 1 6.6e-59 6.6e-59 189.4 0.5 4 146 2 140 1 141 0.98 - +HBAZ_HORSE - 141 sp|P02024|HBB_GORGO - 147 2.2e-58 187.7 0.1 1 1 2.5e-58 2.5e-58 187.5 0.1 4 146 2 140 1 141 0.98 - +HBAD_PASMO - 141 sp|P02024|HBB_GORGO - 147 2.4e-58 187.6 0.1 1 1 2.7e-58 2.7e-58 187.4 0.1 4 146 2 140 1 141 0.98 - +HBA_COLLI - 141 sp|P02024|HBB_GORGO - 147 2.5e-58 187.5 0.2 1 1 2.8e-58 2.8e-58 187.4 0.2 4 146 2 140 1 141 0.98 - +HBB2_TRICR - 145 sp|P02024|HBB_GORGO - 147 1.9e-56 181.4 0.0 1 1 2.2e-56 2.2e-56 181.2 0.0 2 146 1 145 1 145 1.00 - +HBA4_SALIR - 142 sp|P02024|HBB_GORGO - 147 5.3e-56 180.0 0.1 1 1 5.8e-56 5.8e-56 179.8 0.1 4 146 2 141 1 142 0.98 - +MYG_LYCPI - 153 sp|P02024|HBB_GORGO - 147 9.5e-56 179.1 1.8 1 1 1.1e-55 1.1e-55 179.0 1.8 4 146 2 146 1 147 0.97 - +MYG_SAISC - 153 sp|P02024|HBB_GORGO - 147 1.3e-55 178.7 1.0 1 1 1.4e-55 1.4e-55 178.6 1.0 4 146 2 146 1 147 0.98 - +MYG_ESCGI - 153 sp|P02024|HBB_GORGO - 147 3.1e-55 177.5 2.2 1 1 3.4e-55 3.4e-55 177.3 2.2 4 146 2 146 1 147 0.97 - +MYG_PROGU - 153 sp|P02024|HBB_GORGO - 147 5.1e-55 176.8 0.2 1 1 5.7e-55 5.7e-55 176.6 0.2 4 146 2 146 1 147 0.97 - +MYG_HORSE - 153 sp|P02024|HBB_GORGO - 147 9.3e-55 175.9 1.0 1 1 1e-54 1e-54 175.8 1.0 4 146 2 146 1 147 0.97 - +MYG_MOUSE - 153 sp|P02024|HBB_GORGO - 147 1.4e-54 175.3 0.3 1 1 1.6e-54 1.6e-54 175.2 0.3 4 146 2 146 1 147 0.97 - +MYG_MUSAN - 148 sp|P02024|HBB_GORGO - 147 1.6e-44 142.7 0.3 1 1 1.8e-44 1.8e-44 142.6 0.3 8 146 2 141 1 142 0.96 - # # Program: jackhmmer -# Version: 3.2 (June 2018) +# Version: 3.3 (Nov 2019) # Pipeline mode: SEARCH -# Query file: /tmp/tmpw5_nj0/files/000/dataset_1.dat -# Target file: /tmp/tmpw5_nj0/files/000/dataset_2.dat -# Option settings: jackhmmer -N 5 --tblout /tmp/tmpw5_nj0/files/000/dataset_4.dat --domtblout /tmp/tmpw5_nj0/files/000/dataset_5.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --wpb --EmL 200 --EmN 200 --EvL 200 --EvN 200 --EfL 100 --EfN 200 --Eft 0.04 --seed 4 --cpu 1 /tmp/tmpw5_nj0/files/000/dataset_1.dat /tmp/tmpw5_nj0/files/000/dataset_2.dat -# Current dir: /tmp/tmpw5_nj0/job_working_directory/000/3/working -# Date: Mon Jun 11 17:59:06 2018 +# Query file: /tmp/tmpfvu1k4r6/files/e/a/d/dataset_ead1ef79-dd40-459b-b072-01fc401e229a.dat +# Target file: /tmp/tmpfvu1k4r6/files/c/9/e/dataset_c9eb6990-14c2-41da-9304-1bdf155f29e9.dat +# Option settings: jackhmmer -N 5 --tblout /tmp/tmpfvu1k4r6/files/c/c/a/dataset_cca87e56-6fd4-49f3-b29f-dca9b665fb4e.dat --domtblout /tmp/tmpfvu1k4r6/files/a/9/3/dataset_a93530ef-2a8d-4611-9764-b317aa42a6b4.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --wpb --EmL 200 --EmN 200 --EvL 200 --EvN 200 --EfL 100 --EfN 200 --Eft 0.04 --seed 4 --cpu 1 /tmp/tmpfvu1k4r6/files/e/a/d/dataset_ead1ef79-dd40-459b-b072-01fc401e229a.dat /tmp/tmpfvu1k4r6/files/c/9/e/dataset_c9eb6990-14c2-41da-9304-1bdf155f29e9.dat +# Current dir: /tmp/tmpfvu1k4r6/job_working_directory/000/3/working +# Date: Thu May 14 18:30:01 2020 # [ok]