comparison hmmfetch.xml @ 3:cd078bda9921 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit fa7dec5f222510d58f566f4799a04e3731fa03f6

2:694e79e5efb3

<?xml version="1.0"?>
<tool id="hmmer_hmmfetch" name="hmmfetch" version="@WRAPPER_VERSION@.0">
  <description>retrieve profile HMM(s) from a file</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements"/>
  <expand macro="stdio"/>
  <command><![CDATA[
hmmfetch -f $hmmfile $keyfile > $output;
      ]]></command>
  <inputs>
    <!-- TODO: implement auto-indexing -->
    <expand macro="input_hmm" />
    <param name="keyfile" type="data" format="tabular,txt" label="List of HMM names to extract"/>
  </inputs>
  <outputs>
    <data format="hmm3" name="output" label="Selected HMM Models from $hmmfile.name">
    </data>
  </outputs>
  <tests>
    <test>
      <param name="hmmfile" value="fn3.hmm"/>

separated by newlines

By default, fetched HMMs are printed to standard output in HMMER3 format.

@ATTRIBUTION@
]]></help>
  <expand macro="citation"/>
</tool>

3:cd078bda9921

<?xml version="1.0"?>
<tool id="hmmer_hmmfetch" name="hmmfetch" version="@TOOL_VERSION@">
  <description>retrieve profile HMM(s) from a file</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements"/>
  <expand macro="stdio"/>
  <command><![CDATA[
hmmfetch -f '$hmmfile' '$keyfile' > '$output'
  ]]></command>
  <inputs>
    <!-- TODO: implement auto-indexing -->
    <expand macro="input_hmm" />
    <param name="keyfile" type="data" format="tabular,txt" label="List of HMM names to extract"/>
  </inputs>
  <outputs>
    <data name="output" format="hmm3" label="Selected HMM Models from $hmmfile.name">
    </data>
  </outputs>
  <tests>
    <test>
      <param name="hmmfile" value="fn3.hmm"/>

separated by newlines

By default, fetched HMMs are printed to standard output in HMMER3 format.

@ATTRIBUTION@
  ]]></help>
  <expand macro="citation"/>
</tool>