diff hmmfetch.xml @ 3:cd078bda9921 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit fa7dec5f222510d58f566f4799a04e3731fa03f6

--- a/hmmfetch.xml	Wed Apr 04 14:01:57 2018 -0400
+++ b/hmmfetch.xml	Sat Apr 07 03:51:39 2018 -0400
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="hmmer_hmmfetch" name="hmmfetch" version="@WRAPPER_VERSION@.0">
+<tool id="hmmer_hmmfetch" name="hmmfetch" version="@TOOL_VERSION@">
   <description>retrieve profile HMM(s) from a file</description>
   <macros>
     <import>macros.xml</import>
@@ -7,15 +7,15 @@
   <expand macro="requirements"/>
   <expand macro="stdio"/>
   <command><![CDATA[
-hmmfetch -f $hmmfile $keyfile > $output;
-      ]]></command>
+hmmfetch -f '$hmmfile' '$keyfile' > '$output'
+  ]]></command>
   <inputs>
     <!-- TODO: implement auto-indexing -->
     <expand macro="input_hmm" />
     <param name="keyfile" type="data" format="tabular,txt" label="List of HMM names to extract"/>
   </inputs>
   <outputs>
-    <data format="hmm3" name="output" label="Selected HMM Models from $hmmfile.name">
+    <data name="output" format="hmm3" label="Selected HMM Models from $hmmfile.name">
     </data>
   </outputs>
   <tests>
@@ -35,6 +35,6 @@
 By default, fetched HMMs are printed to standard output in HMMER3 format.
 
 @ATTRIBUTION@
-]]></help>
+  ]]></help>
   <expand macro="citation"/>
 </tool>