Mercurial > repos > iuc > hmmer_hmmfetch
diff hmmfetch.xml @ 3:cd078bda9921 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit fa7dec5f222510d58f566f4799a04e3731fa03f6
author | iuc |
---|---|
date | Sat, 07 Apr 2018 03:51:39 -0400 |
parents | 1d78de693262 |
children | 1fca13688921 |
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--- a/hmmfetch.xml Wed Apr 04 14:01:57 2018 -0400 +++ b/hmmfetch.xml Sat Apr 07 03:51:39 2018 -0400 @@ -1,5 +1,5 @@ <?xml version="1.0"?> -<tool id="hmmer_hmmfetch" name="hmmfetch" version="@WRAPPER_VERSION@.0"> +<tool id="hmmer_hmmfetch" name="hmmfetch" version="@TOOL_VERSION@"> <description>retrieve profile HMM(s) from a file</description> <macros> <import>macros.xml</import> @@ -7,15 +7,15 @@ <expand macro="requirements"/> <expand macro="stdio"/> <command><![CDATA[ -hmmfetch -f $hmmfile $keyfile > $output; - ]]></command> +hmmfetch -f '$hmmfile' '$keyfile' > '$output' + ]]></command> <inputs> <!-- TODO: implement auto-indexing --> <expand macro="input_hmm" /> <param name="keyfile" type="data" format="tabular,txt" label="List of HMM names to extract"/> </inputs> <outputs> - <data format="hmm3" name="output" label="Selected HMM Models from $hmmfile.name"> + <data name="output" format="hmm3" label="Selected HMM Models from $hmmfile.name"> </data> </outputs> <tests> @@ -35,6 +35,6 @@ By default, fetched HMMs are printed to standard output in HMMER3 format. @ATTRIBUTION@ -]]></help> + ]]></help> <expand macro="citation"/> </tool>