Mercurial > repos > iuc > hmmer_nhmmer

comparison nhmmer.xml @ 2:ae4754e7c97a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit a1a31824fc24d5e652c263b998b7f2363cbd7610
author iuc
date Wed, 04 Apr 2018 14:01:13 -0400
parents f239ab5f45f4
children c8e81e43bff1
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1:d15979968b74 2:ae4754e7c97a
40 </inputs> 40 </inputs>
41 <outputs> 41 <outputs>
42 <data format="txt" name="output" label="NHMMER search of $seqfile.name in $hmmfile.name"/> 42 <data format="txt" name="output" label="NHMMER search of $seqfile.name in $hmmfile.name"/>
43 43
44 <data format="txt" name="tblout" label="Table of per-sequence hits from HMM matches of $seqfile.name in $hmmfile.name"> 44 <data format="txt" name="tblout" label="Table of per-sequence hits from HMM matches of $seqfile.name in $hmmfile.name">
45 <filter>'tblout' in str(oformat)</filter> 45 <filter>oformat and 'tblout' in oformat</filter>
46 </data> 46 </data>
47 <data format="txt" name="dfamtblout" label="Table of per-sequence/per-domain hits from HMM matches of $seqfile.name in $hmmfile.name"> 47 <data format="txt" name="dfamtblout" label="Table of per-sequence/per-domain hits from HMM matches of $seqfile.name in $hmmfile.name">
48 <filter>'pfamtblout' in str(oformat)</filter> 48 <filter>oformat and 'pfamtblout' in oformat</filter>
49 </data> 49 </data>
50 <data format="txt" name="aliscoresout" label="Scores for positional matches of $seqfile.name in $hmmfile.name"> 50 <data format="txt" name="aliscoresout" label="Scores for positional matches of $seqfile.name in $hmmfile.name">
51 <filter>'aliscoresout' in str(oformat)</filter> 51 <filter>oformat and 'aliscoresout' in oformat</filter>
52 </data> 52 </data>
53 </outputs> 53 </outputs>
54 <tests> 54 <tests>
55 <test> 55 <test>
56 <param name="hmmfile" value="MADE1.hmm"/> 56 <param name="hmmfile" value="MADE1.hmm"/>