diff test-data/fn3.hmm @ 0:f239ab5f45f4 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
author iuc
date Sat, 25 Jun 2016 15:07:17 -0400
parents
children be0cc39776f9
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line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/fn3.hmm	Sat Jun 25 15:07:17 2016 -0400
@@ -0,0 +1,285 @@
+HMMER3/f [3.1 | February 2013]
+NAME  fn3
+ACC   PF00041.13
+DESC  Fibronectin type III domain
+LENG  86
+ALPH  amino
+RF    no
+MM    no
+CONS  yes
+CS    yes
+MAP   yes
+DATE  Fri Feb 15 06:04:13 2013
+NSEQ  106
+EFFN  11.415833
+CKSUM 3564431818
+GA    8.00 7.20
+TC    8.00 7.20
+NC    7.90 7.90
+STATS LOCAL MSV       -9.4043  0.71847
+STATS LOCAL VITERBI   -9.7737  0.71847
+STATS LOCAL FORWARD   -3.8341  0.71847
+HMM          A        C        D        E        F        G        H        I        K        L        M        N        P        Q        R        S        T        V        W        Y   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.70330  4.91262  3.03272  2.64079  3.60307  2.84344  3.74204  3.07942  2.79841  2.65364  4.14864  2.95826  2.87120  3.02176  2.96125  2.44783  2.59757  2.57680  4.02726  3.21526
+          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
+          0.00338  6.08833  6.81068  0.61958  0.77255  0.00000        *
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+          2.68629  4.42236  2.77530  2.73088  3.46365  2.40512  3.72505  3.29365  2.67737  2.69316  4.24701  2.90358  2.73734  3.18157  2.89812  2.37898  2.77517  2.98515  4.58488  3.61514
+          0.09796  2.38361  6.81068  0.10064  2.34607  0.48576  0.95510
+      2   2.70230  5.97353  2.24744  2.62947  5.31433  2.60356  4.43584  4.79731  3.17221  2.95090  5.01531  3.26630  2.09873  3.30219  3.34190  1.45782  3.14099  3.57507  6.40877  4.25623      3 s - - -
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+          0.00338  6.08833  6.81068  0.61958  0.77255  0.48576  0.95510
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+     29   2.45969  5.96445  2.88574  2.61716  5.30131  1.53630  4.43818  3.46883  2.98393  3.60366  4.33332  3.25719  4.28257  3.08417  2.40821  2.08539  3.20111  2.81105  6.40207  4.25093     36 g - - S
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+          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
+          0.00338  6.08833  6.81068  0.61958  0.77255  0.48576  0.95510
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+          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
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+          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
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+          0.00227  6.08723        *  0.61958  0.77255  0.00000        *
+//