Mercurial > repos > iuc > homer_scanmotifgenomewide

view test-data/motif_test1/homerResults/motif6.similar.html @ 2:f15794662a69 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e6639e130c5bf50f489dd09e38a1cbc712280fff
author iuc
date Fri, 07 Apr 2023 15:00:57 +0000
parents db456c398880
children
line wrap: on
line source

<HTML><HEAD><TITLE>motif6</TITLE></HEAD>
<H2>Information for motif6</H2>
<svg width="255" height="50">
 <g font-family="Arial" font-weight="bold" font-size="66.5">
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,2,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,0,44)">C</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,1,39)">T</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.700,0,34)">G</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,27,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,25,44)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,25,39)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.700,26,34)">T</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,52,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,50,44)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,50,39)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.700,51,34)">T</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,77,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,75,44)">C</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,76,39)">T</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.700,75,34)">G</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,102,49)">A</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,100,44)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,101,39)">T</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.700,100,34)">C</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,127,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,125,44)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,125,39)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.700,126,34)">T</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,152,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,150,44)">C</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,151,39)">T</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.700,150,34)">G</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,177,49)">A</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,175,44)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,176,39)">T</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.700,175,34)">C</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,202,49)">A</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,200,44)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,201,39)">T</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.700,200,34)">C</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,225,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,225,44)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,226,39)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.700,227,34)">A</text>
  
 </g>
</svg>
<BR/>
Reverse Opposite:<BR/><svg width="255" height="50">
 <g font-family="Arial" font-weight="bold" font-size="66.5">
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,2,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,0,44)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,0,39)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.700,1,34)">T</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,27,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,25,44)">C</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,26,39)">T</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.700,25,34)">G</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,52,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,50,44)">C</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,51,39)">T</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.700,50,34)">G</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,77,49)">A</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,75,44)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,76,39)">T</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.700,75,34)">C</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,100,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,100,44)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,101,39)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.700,102,34)">A</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,127,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,125,44)">C</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,126,39)">T</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.700,125,34)">G</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,152,49)">A</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,150,44)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,151,39)">T</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.700,150,34)">C</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,175,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,175,44)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,176,39)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.700,177,34)">A</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,200,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,200,44)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,201,39)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.700,202,34)">A</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,227,49)">A</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,225,44)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,226,39)">T</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.700,225,34)">C</text>
  
 </g>
</svg>
<BR/>
<TABLE border="1" cellpading="0" cellspacing="0">
<TR><TD>p-value:</TD><TD>1e-1</TD></TR>
<TR><TD>log p-value:</TD><TD>-2.907e+00</TD></TR>
<TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
<TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
<TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
<TR><TD>Number of Background Sequences with motif</TD><TD>219.9</TD></TR>
<TR><TD>Percentage of Background Sequences with motif</TD><TD>5.49%</TD></TR>
<TR><TD>Average Position of motif in Targets</TD><TD>140.0 +/- 0.0bp</TD></TR>
<TR><TD>Average Position of motif in Background</TD><TD>103.4 +/- 83.3bp</TD></TR>
<TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
<TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
<TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif6.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif6RV.motif">reverse opposite</A></TD></TR>
</TABLE>
<H3>Similar de novo motifs found</H3>
<TABLE border="1" cellpading="0" cellspacing="0">
<TR><TD>Rank</TD><TD>Match Score</TD><TD>Redundant Motif</TD><TD>P-value</TD><TD>log P-value</TD><TD>% of Targets</TD><TD>% of Background</TD><TD>Motif file</TD></TR>
<TR><TD>1</TD><TD>0.894</TD><TD><svg width="205" height="50">
 <g font-family="Arial" font-weight="bold" font-size="66.5">
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,2,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,0,44)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,0,39)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.700,1,34)">T</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,27,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,25,44)">C</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,26,39)">T</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.700,25,34)">G</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,52,49)">A</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,50,44)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,51,39)">T</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.700,50,34)">C</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,77,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,75,44)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,75,39)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.700,76,34)">T</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,102,49)">A</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,100,44)">C</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,101,39)">T</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.700,100,34)">G</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,127,49)">A</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,125,44)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,126,39)">T</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.700,125,34)">C</text>
  
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.100,152,49)">A</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,150,44)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,151,39)">T</text>
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.700,150,34)">C</text>
  
  <text fill="#0000EE" x="0" y="0"  transform="matrix(0.59,0,0,0.100,175,49)">C</text>
  <text fill="#F9A500" x="0" y="0"  transform="matrix(0.55,0,0,0.100,175,44)">G</text>
  <text fill="#DD0000" x="0" y="0"  transform="matrix(0.65,0,0,0.100,176,39)">T</text>
  <text fill="#00BB00" x="0" y="0"  transform="matrix(0.53,0,0,0.700,177,34)">A</text>
  
 </g>
</svg>

</TD><TD>1e-1</TD><TD>-2.897885</TD><TD>100.00%</TD><TD>5.53%</TD><TD><A target="_blank" HREF="motif6.similar1.motif">motif file (matrix)</A></TD></TR>
</TABLE>
<P></P>
</BODY></HTML>