Mercurial > repos > iuc > humann2
changeset 4:019864881779 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann2 commit 52d835f027b052a0a887be14a55faf9fa9e456ae"
| author | iuc |
|---|---|
| date | Mon, 01 Feb 2021 18:17:35 +0000 |
| parents | b168c0ef3c14 |
| children | bb13650e8115 |
| files | humann2.xml repository_dependencies.xml |
| diffstat | 2 files changed, 6 insertions(+), 3 deletions(-) [+] |
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--- a/humann2.xml Sat Jan 25 18:25:32 2020 -0500 +++ b/humann2.xml Mon Feb 01 18:17:35 2021 +0000 @@ -1,8 +1,11 @@ -<tool id="humann2" name="HUMAnN2" version="@WRAPPER_VERSION@.0"> +<tool id="humann2" name="HUMAnN2" version="@WRAPPER_VERSION@.1"> <description>to profile presence/absence and abundance of microbial pathways and gene families</description> <macros> <import>humann2_macros.xml</import> </macros> + <stdio> + <regex match="Failed to allocate sufficient memory." source="stderr" level="fatal_oom" description="Out of memory error occurred" /> + </stdio> <expand macro="requirements"> <requirement type="package" version="2.3.0">bowtie2</requirement> <requirement type="package" version="2.6.0">metaphlan2</requirement>
--- a/repository_dependencies.xml Sat Jan 25 18:25:32 2020 -0500 +++ b/repository_dependencies.xml Mon Feb 01 18:17:35 2021 +0000 @@ -1,5 +1,5 @@ <?xml version="1.0" ?> <repositories description="This requires the HUMAnN2 data manager definition to install all required databases."> - <repository changeset_revision="9c4ad82be5bd" name="data_manager_metaphlan2_database_downloader" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/> - <repository changeset_revision="9244804f69a7" name="data_manager_humann2_database_downloader" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/> + <repository name="data_manager_metaphlan2_database_downloader" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="83f07f40b200"/> + <repository name="data_manager_humann2_database_downloader" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ff9cf22838d4"/> </repositories> \ No newline at end of file