Mercurial > repos > iuc > humann2_genefamilies_genus_level
changeset 4:79cd822debef draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann2 commit 55eb503f50c54695ec36c3d4671c2b3e64d05f40"
| author | iuc |
|---|---|
| date | Fri, 05 Feb 2021 18:27:01 +0000 |
| parents | 6c84982ee6f7 |
| children | 654548ae1357 |
| files | humann2_genefamilies_genus_level.xml humann2_macros.xml |
| diffstat | 2 files changed, 9 insertions(+), 1 deletions(-) [+] |
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--- a/humann2_genefamilies_genus_level.xml Mon Feb 01 18:25:21 2021 +0000 +++ b/humann2_genefamilies_genus_level.xml Fri Feb 05 18:27:01 2021 +0000 @@ -1,8 +1,9 @@ -<tool id="humann2_genefamilies_genus_level" name="Create a genus level gene families file" version="@WRAPPER_VERSION@.0"> +<tool id="humann2_genefamilies_genus_level" name="Create a genus level gene families file" version="@WRAPPER_VERSION@.1"> <description></description> <macros> <import>humann2_macros.xml</import> </macros> + <expand macro="stdio"/> <expand macro="requirements"/> <expand macro="version"/> <command detect_errors="exit_code"><![CDATA[
--- a/humann2_macros.xml Mon Feb 01 18:25:21 2021 +0000 +++ b/humann2_macros.xml Fri Feb 05 18:27:01 2021 +0000 @@ -7,6 +7,13 @@ <yield/> </requirements> </xml> + + <xml name="stdio"> + <stdio> + <regex match="Failed to allocate sufficient memory." source="stderr" level="fatal_oom" description="Out of memory error occurred" /> + <regex match="MemoryError" source="stderr" level="fatal_oom" description="Out of memory error occurred" /> + </stdio> + </xml> <xml name="version"> <version_command>humann2 --version</version_command> </xml>