diff hyphy_busted.xml @ 35:e908c4003bd8 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit e7a89841d59689e87db592e112f9c8fb5331d954

--- a/hyphy_busted.xml	Thu Aug 18 13:52:20 2022 +0000
+++ b/hyphy_busted.xml	Thu Mar 02 15:18:01 2023 +0000
@@ -1,5 +1,4 @@
-<?xml version="1.0"?>
-<tool id="hyphy_busted" name="HyPhy-BUSTED" version="@TOOL_VERSION@+galaxy2" profile="19.09">
+<tool id="hyphy_busted" name="HyPhy-BUSTED" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>Branch-site Unrestricted Statistical Test for Episodic Diversification</description>
     <macros>
         <import>macros.xml</import>
@@ -31,7 +30,13 @@
         <test>
             <param name="input_file" ftype="fasta" value="absrel-in1.fa"/>
             <param name="input_nhx" ftype="nhx" value="absrel-in1.nhx"/>
-            <output name="busted_output" file="busted-out1.json" compare="sim_size"/>
+            <output name="busted_output">
+                <assert_contents>
+                    <has_size value="113683" delta="2000"/>
+                    <has_text text="substitutions"/>
+                    <has_text text="test results"/>
+                </assert_contents>
+            </output>
         </test>
         <test>
             <param name="input_file" ftype="nex" value="busted-in2.nex"/>
@@ -41,8 +46,19 @@
             </conditional>
             <param name="srv_options" value="specify" />
             <param name="save_alternative_model" value="true" />
-            <output name="busted_output" file="busted-out2-1.json" compare="sim_size"/>
-            <output name="alternative_model" file="busted-out2-2.json" compare="sim_size"/>
+            <output name="busted_output">
+                <assert_contents>
+                    <has_size value="112119" delta="2000"/>
+                    <has_text text="substitutions"/>
+                    <has_text text="test results"/>
+                </assert_contents>
+            </output>
+            <output name="alternative_model">
+                <assert_contents>
+                    <has_size value="333928" delta="2000"/>
+                    <has_text text="END;"/>
+                </assert_contents>
+            </output>
         </test>
     </tests>
     <help><![CDATA[