annotate test-data/relax-out2-1.json @ 9:193dcaef2169 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
author iuc
date Wed, 30 Mar 2022 00:21:15 +0000
parents 4bf743518e41
children f5bbd4b34541
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rev   line source
2
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
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iuc
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
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18 "original name":"BABOON"
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23 "Nucleotide GTR":0.2660536011315811,
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
28 "original name":"CAT"
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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iuc
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diff changeset
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iuc
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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iuc
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iuc
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iuc
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iuc
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iuc
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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iuc
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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60 "HUMAN":{
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iuc
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iuc
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iuc
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iuc
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iuc
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iuc
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diff changeset
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iuc
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70 "MOUSE":{
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diff changeset
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diff changeset
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iuc
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iuc
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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diff changeset
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iuc
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diff changeset
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iuc
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iuc
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iuc
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iuc
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diff changeset
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iuc
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iuc
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iuc
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iuc
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diff changeset
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iuc
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diff changeset
101 "Nucleotide GTR":0.06614755778044307,
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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diff changeset
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iuc
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diff changeset
110 "Nucleotide GTR":0.09883748387954429,
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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iuc
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diff changeset
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iuc
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diff changeset
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diff changeset
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iuc
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119 "Nucleotide GTR":0.1062201244057951,
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iuc
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iuc
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iuc
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iuc
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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iuc
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iuc
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diff changeset
128 "Nucleotide GTR":0.02567813733543303,
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
137 "Nucleotide GTR":0.1871390433004313,
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
140 "RELAX partitioned descriptive":0.2506475053874151,
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iuc
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diff changeset
141 "k (general descriptive)":1.582105640200874,
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iuc
parents:
diff changeset
142 "original name":"PIG"
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iuc
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diff changeset
143 },
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iuc
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diff changeset
144 "RAT":{
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
147 "Nucleotide GTR":0.06661490534189227,
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iuc
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diff changeset
148 "RELAX alternative":0.07311180317129368,
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iuc
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diff changeset
149 "RELAX null":0.07112698282214641,
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iuc
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diff changeset
150 "RELAX partitioned descriptive":0.07451416024404128,
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iuc
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diff changeset
151 "k (general descriptive)":1.317928928374736,
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iuc
parents:
diff changeset
152 "original name":"RAT"
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iuc
parents:
diff changeset
153 },
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iuc
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diff changeset
154 "RHMONKEY":{
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iuc
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diff changeset
155 "General descriptive":0.003673715052669516,
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iuc
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diff changeset
156 "MG94xREV with separate rates for branch sets":0.003755247927570558,
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iuc
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diff changeset
157 "Nucleotide GTR":0.003778804730491441,
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iuc
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diff changeset
158 "RELAX alternative":0.004176749981889291,
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iuc
parents: 2
diff changeset
159 "RELAX null":0.00397871921631754,
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iuc
parents: 2
diff changeset
160 "RELAX partitioned descriptive":0.004188079354984015,
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iuc
parents: 2
diff changeset
161 "k (general descriptive)":5.301456309232226,
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iuc
parents:
diff changeset
162 "original name":"RHMONKEY"
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iuc
parents:
diff changeset
163 }
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iuc
parents:
diff changeset
164 },
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iuc
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diff changeset
165 "attributes":{
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iuc
parents:
diff changeset
166 "General descriptive":{
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iuc
parents:
diff changeset
167 "attribute type":"branch length",
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iuc
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diff changeset
168 "display order":4
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iuc
parents:
diff changeset
169 },
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iuc
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diff changeset
170 "MG94xREV with separate rates for branch sets":{
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iuc
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diff changeset
171 "attribute type":"branch length",
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iuc
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diff changeset
172 "display order":1
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iuc
parents:
diff changeset
173 },
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iuc
parents:
diff changeset
174 "Nucleotide GTR":{
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iuc
parents:
diff changeset
175 "attribute type":"branch length",
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
176 "display order":0
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iuc
parents:
diff changeset
177 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
178 "RELAX alternative":{
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iuc
parents:
diff changeset
179 "attribute type":"branch length",
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
180 "display order":2
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iuc
parents:
diff changeset
181 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
182 "RELAX null":{
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iuc
parents:
diff changeset
183 "attribute type":"branch length",
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
184 "display order":3
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
185 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
186 "RELAX partitioned descriptive":{
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iuc
parents:
diff changeset
187 "attribute type":"branch length",
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
188 "display order":5
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
189 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
190 "k (general descriptive)":{
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iuc
parents:
diff changeset
191 "attribute type":"branch label",
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
192 "display order":4
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
193 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
194 "original name":{
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
195 "attribute type":"node label",
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
196 "display order":-1
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
197 }
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
198 }
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
199 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
200 "data partitions":{
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iuc
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diff changeset
201 "0":{
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iuc
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diff changeset
202 "coverage": [
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iuc
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diff changeset
203 [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186]
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
204 ],
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
205 "name":"relax.filter.default"
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
206 }
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
207 },
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iuc
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diff changeset
208 "fits":{
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iuc
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209 "General descriptive":{
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
210 "AIC-c":6945.886057024934,
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iuc
parents: 2
diff changeset
211 "Log Likelihood":-3420.484282637879,
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
212 "Rate Distributions":{
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iuc
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diff changeset
213 "Shared":{
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iuc
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214 "0":{
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
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diff changeset
215 "omega":2.201373594751134e-18,
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iuc
parents: 2
diff changeset
216 "proportion":0.5258178735075876
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iuc
parents:
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217 },
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iuc
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diff changeset
218 "1":{
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iuc
parents: 2
diff changeset
219 "omega":2.201373594751134e-18,
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iuc
parents: 2
diff changeset
220 "proportion":0.01992025780064184
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iuc
parents:
diff changeset
221 },
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iuc
parents:
diff changeset
222 "2":{
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iuc
parents: 2
diff changeset
223 "omega":2.201373412388544,
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iuc
parents: 2
diff changeset
224 "proportion":0.4542618686917706
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iuc
parents:
diff changeset
225 }
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iuc
parents:
diff changeset
226 }
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
227 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
228 "display order":4,
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
229 "estimated parameters":51
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
230 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
231 "MG94xREV with separate rates for branch sets":{
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
232 "AIC-c":6987.278076404838,
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iuc
parents:
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233 "Equilibrium frequencies": [
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iuc
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diff changeset
234 [0.04876086397632926],
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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diff changeset
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iuc
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diff changeset
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diff changeset
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iuc
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diff changeset
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diff changeset
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iuc
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diff changeset
283 [0.02049322866376102],
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
284 [0.008933621043463411],
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iuc
parents:
diff changeset
285 [0.007295949736387736],
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iuc
parents:
diff changeset
286 [0.009068296583349953],
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iuc
parents:
diff changeset
287 [0.007608523013862737],
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iuc
parents:
diff changeset
288 [0.007628698224327205],
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iuc
parents:
diff changeset
289 [0.009481877006094248],
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iuc
parents:
diff changeset
290 [0.00795552712159237],
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iuc
parents:
diff changeset
291 [0.01396413011303752],
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iuc
parents:
diff changeset
292 [0.01140428846505027],
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iuc
parents:
diff changeset
293 [0.01417464125436193],
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iuc
parents:
diff changeset
294 [0.01189287130232129]
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
295 ],
9
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
296 "Log Likelihood":-3461.064187903018,
2
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
297 "Rate Distributions":{
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iuc
parents:
diff changeset
298 "non-synonymous/synonymous rate ratio for *Reference*": [
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
299 [1.243401858007084, 1]
2
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
300 ],
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
301 "non-synonymous/synonymous rate ratio for *Test*": [
9
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
302 [0.5612874934764923, 1]
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iuc
parents:
diff changeset
303 ]
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iuc
parents:
diff changeset
304 },
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iuc
parents:
diff changeset
305 "display order":1,
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
306 "estimated parameters":32
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iuc
parents:
diff changeset
307 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
308 "Nucleotide GTR":{
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
309 "AIC-c":7112.857288723968,
2
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iuc
parents:
diff changeset
310 "Equilibrium frequencies": [
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iuc
parents:
diff changeset
311 [0.3592490842490842],
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iuc
parents:
diff changeset
312 [0.181959706959707],
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iuc
parents:
diff changeset
313 [0.240018315018315],
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iuc
parents:
diff changeset
314 [0.2187728937728937]
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
315 ],
9
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
316 "Log Likelihood":-3532.321213744258,
2
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
317 "Rate Distributions":{
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iuc
parents:
diff changeset
318 "Substitution rate from nucleotide A to nucleotide C":0.5501644800943087,
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
319 "Substitution rate from nucleotide A to nucleotide G":1,
9
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
320 "Substitution rate from nucleotide A to nucleotide T":0.2646800222727828,
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
321 "Substitution rate from nucleotide C to nucleotide G":0.4918071762416347,
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
322 "Substitution rate from nucleotide C to nucleotide T":1.028675134787727,
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
323 "Substitution rate from nucleotide G to nucleotide T":0.3045013055839741
2
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
324 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
325 "display order":0,
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
326 "estimated parameters":24
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iuc
parents:
diff changeset
327 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
328 "RELAX alternative":{
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
329 "AIC-c":6909.668413948684,
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
330 "Log Likelihood":-3408.69933855329,
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
331 "Rate Distributions":{
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iuc
parents:
diff changeset
332 "Reference":{
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iuc
parents:
diff changeset
333 "0":{
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iuc
parents:
diff changeset
334 "omega":0,
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
335 "proportion":0.3825895192221547
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
336 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
337 "1":{
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iuc
parents: 2
diff changeset
338 "omega":0.003503464580598538,
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
339 "proportion":0
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iuc
parents:
diff changeset
340 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
341 "2":{
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iuc
parents: 2
diff changeset
342 "omega":2.417572962231385,
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
343 "proportion":0.6174104807778453
2
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
344 }
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
345 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
346 "Synonymous site-to-site rates":{
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iuc
parents:
diff changeset
347 "0":{
9
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
348 "proportion":0.2789425737851868,
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
349 "rate":0.2834765074731829
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
350 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
351 "1":{
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
352 "proportion":0.6311785441975573,
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
353 "rate":0.9970973177052372
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
354 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
355 "2":{
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iuc
parents: 2
diff changeset
356 "proportion":0.089878882017256,
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
357 "rate":3.244142488658602
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
358 }
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
359 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
360 "Test":{
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iuc
parents:
diff changeset
361 "0":{
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iuc
parents:
diff changeset
362 "omega":0,
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
363 "proportion":0.3825895192221547
2
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
364 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
365 "1":{
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
366 "omega":0.9998114377116485,
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
367 "proportion":0
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
368 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
369 "2":{
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
370 "omega":1.000029443594731,
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
371 "proportion":0.6174104807778453
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
372 }
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
373 }
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
374 },
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iuc
parents:
diff changeset
375 "display order":2,
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
376 "estimated parameters":45
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
377 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
378 "RELAX null":{
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iuc
parents: 2
diff changeset
379 "AIC-c":6919.152853316747,
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
380 "Log Likelihood":-3414.491495151524,
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
381 "Rate Distributions":{
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iuc
parents:
diff changeset
382 "Reference":{
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iuc
parents:
diff changeset
383 "0":{
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iuc
parents:
diff changeset
384 "omega":0,
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
385 "proportion":0.3885051761591228
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
386 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
387 "1":{
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iuc
parents: 2
diff changeset
388 "omega":0.9958737025997172,
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iuc
parents: 2
diff changeset
389 "proportion":0
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
390 },
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iuc
parents:
diff changeset
391 "2":{
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iuc
parents: 2
diff changeset
392 "omega":1.887643080900262,
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iuc
parents: 2
diff changeset
393 "proportion":0.6114948238408772
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
394 }
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
395 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
396 "Synonymous site-to-site rates":{
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iuc
parents:
diff changeset
397 "0":{
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iuc
parents: 2
diff changeset
398 "proportion":0.2642938080646302,
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
399 "rate":0.2741590488311177
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
400 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
401 "1":{
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
402 "proportion":0.633162055223991,
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
403 "rate":0.9728788992663913
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
404 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
405 "2":{
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iuc
parents: 2
diff changeset
406 "proportion":0.1025441367113787,
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
407 "rate":3.038218152856258
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
408 }
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
409 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
410 "Test":{
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iuc
parents:
diff changeset
411 "0":{
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iuc
parents:
diff changeset
412 "omega":0,
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
413 "proportion":0.3885051761591228
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
414 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
415 "1":{
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
416 "omega":0.9958737025997172,
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
417 "proportion":0
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
418 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
419 "2":{
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iuc
parents: 2
diff changeset
420 "omega":1.887643080900262,
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iuc
parents: 2
diff changeset
421 "proportion":0.6114948238408772
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
422 }
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
423 }
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
424 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
425 "display order":3,
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
426 "estimated parameters":44
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
427 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
428 "RELAX partitioned descriptive":{
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iuc
parents: 2
diff changeset
429 "AIC-c":6917.810941882631,
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
430 "Log Likelihood":-3408.559317095162,
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
431 "Rate Distributions":{
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iuc
parents:
diff changeset
432 "Reference":{
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iuc
parents:
diff changeset
433 "0":{
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iuc
parents: 2
diff changeset
434 "omega":0.03550460650841439,
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
435 "proportion":0.354985198548996
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
436 },
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iuc
parents:
diff changeset
437 "1":{
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iuc
parents: 2
diff changeset
438 "omega":0.05439939847728128,
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
439 "proportion":0.02231130867735708
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
440 },
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iuc
parents:
diff changeset
441 "2":{
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iuc
parents: 2
diff changeset
442 "omega":2.333762420535514,
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
443 "proportion":0.6227034927736469
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
444 }
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
445 },
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iuc
parents:
diff changeset
446 "Test":{
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iuc
parents:
diff changeset
447 "0":{
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iuc
parents:
diff changeset
448 "omega":0,
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
449 "proportion":0.3705590531463396
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
450 },
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iuc
parents:
diff changeset
451 "1":{
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iuc
parents:
diff changeset
452 "omega":0,
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
453 "proportion":0.06265340406614885
2
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
454 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
455 "2":{
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193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
456 "omega":1.08372848194659,
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
457 "proportion":0.5667875427875115
2
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
458 }
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
459 }
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
460 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
461 "display order":5,
9
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
462 "estimated parameters":49
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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463 }
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
464 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
465 "input":{
9
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
466 "file name":"/tmp/tmpkgsdjj1d/job_working_directory/000/5/working/./input.nex",
2
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
467 "number of sequences":10,
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
468 "number of sites":187,
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
469 "partition count":1,
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
470 "trees":{
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
471 "0":"((((PIG:0.147969,COW:0.21343)Node3:0.08509899999999999,HORSE:0.165787,CAT:0.264806)Node2:0.058611,((RHMONKEY:0.002015,BABOON:0.003108)Node9:0.022733,(HUMAN:0.004349,CHIMP:0.000799)Node12:0.011873)Node8:0.101856)Node1:0.340802,RAT:0.050958,MOUSE:0.09795)"
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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472 }
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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473 },
9
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
474 "runtime":"2.5.32",
2
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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475 "test results":{
9
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
476 "LRT":11.58431319646934,
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
477 "p-value":0.0006651049394417186,
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
478 "relaxation or intensification parameter":3.335337302186161e-05
2
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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479 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
480 "tested":{
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
481 "0":{
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
482 "BABOON":"Test",
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
483 "CAT":"Reference",
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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484 "CHIMP":"Test",
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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485 "COW":"Reference",
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
486 "HORSE":"Reference",
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
487 "HUMAN":"Test",
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
488 "MOUSE":"Reference",
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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489 "Node1":"Test",
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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490 "Node12":"Test",
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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491 "Node2":"Reference",
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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492 "Node3":"Reference",
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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493 "Node8":"Test",
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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494 "Node9":"Test",
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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495 "PIG":"Reference",
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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496 "RAT":"Reference",
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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497 "RHMONKEY":"Test"
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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498 }
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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499 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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500 "timers":{
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
501 "General descriptive model fitting":{
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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502 "order":2,
9
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
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503 "timer":105
2
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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504 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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505 "Overall":{
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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506 "order":0,
9
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
507 "timer":3013
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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508 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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509 "Preliminary model fitting":{
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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510 "order":1,
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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511 "timer":8
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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512 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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513 "RELAX alternative model fitting":{
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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514 "order":3,
9
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
515 "timer":1229
2
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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516 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
517 "RELAX null model fitting":{
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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518 "order":4,
9
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
519 "timer":690
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4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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520 },
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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521 "RELAX partitioned descriptive":{
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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522 "order":5,
9
193dcaef2169 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
523 "timer":980
2
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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524 }
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
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525 }
4bf743518e41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
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parents:
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526 }