Mercurial > repos > iuc > idba_ud

annotate test-data/out/log @ 0:fdaf2375d405 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
author iuc
date Fri, 21 Sep 2018 15:25:56 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
1 number of threads 4
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
2 reads 302
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
3 long reads 0
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
4 extra reads 0
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
5 read_length 76
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
6 kmer 20
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
7 kmers 728 727
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
8 merge bubble 0
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
9 contigs: 1 n50: 747 max: 747 mean: 747 total length: 747 n80: 747
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
10 aligned 300 reads
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
11 confirmed bases: 690 correct reads: 230 bases: 0
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
12 distance mean 214 sd 49.643
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
13 seed contigs 1 local contigs 2
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
14 kmer 40
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
15 kmers 710 709
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
16 merge bubble 0
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
17 contigs: 1 n50: 749 max: 749 mean: 749 total length: 749 n80: 749
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
18 aligned 302 reads
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
19 confirmed bases: 692 correct reads: 231 bases: 0
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
20 distance mean 213.649 sd 49.4062
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
21 seed contigs 1 local contigs 2
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
22 kmer 60
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
23 kmers 690 689
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
24 merge bubble 0
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
25 contigs: 1 n50: 749 max: 749 mean: 749 total length: 749 n80: 749
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
26 aligned 302 reads
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
27 confirmed bases: 692 correct reads: 231 bases: 0
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
28 distance mean 213.649 sd 49.4062
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
29 seed contigs 1 local contigs 2
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
30 kmer 80
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
31 kmers 670 669
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
32 merge bubble 0
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
33 contigs: 1 n50: 749 max: 749 mean: 749 total length: 749 n80: 749
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
34 aligned 302 reads
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
35 confirmed bases: 692 correct reads: 231 bases: 0
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
36 distance mean 213.649 sd 49.4062
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
37 seed contigs 1 local contigs 2
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
38 kmer 100
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
39 kmers 650 649
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
40 merge bubble 0
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
41 contigs: 1 n50: 749 max: 749 mean: 749 total length: 749 n80: 749
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
42 reads 302
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
43 aligned 302 reads
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
44 distance mean 213.649 sd 49.4062
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
45 expected coverage 0.448071
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
46 edgs 0
fdaf2375d405 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 6901a5d3feb96ea81d2e3b765b39e32cb94565eb
iuc
parents:
diff changeset
47 contigs: 1 n50: 749 max: 749 mean: 749 total length: 749 n80: 749