diff test-data/idr_input4.1.gff @ 0:d3ebbf39b1c5 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idr/ commit 65024f2c106a2a7af0e2b656123058393941c41b

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/idr_input4.1.gff	Tue Aug 22 05:20:25 2017 -0400
@@ -0,0 +1,499 @@
+##gff-version 2
+##bed_to_gff_converter.py
+chr19	bed2gff	.	50083710	50084074	0	.	.	.;
+chr1	bed2gff	.	44678951	44679261	0	.	.	.;
+chr6	bed2gff	.	28048576	28048870	0	.	.	.;
+chr22	bed2gff	.	22337038	22337397	0	.	.	.;
+chr11	bed2gff	.	59578147	59578443	0	.	.	.;
+chr15	bed2gff	.	35261840	35262132	0	.	.	.;
+chr12	bed2gff	.	109490191	109490472	0	.	.	.;
+chr5	bed2gff	.	148724797	148725118	0	.	.	.;
+chr8	bed2gff	.	56987001	56987305	0	.	.	.;
+chr6	bed2gff	.	31515127	31515462	0	.	.	.;
+chr12	bed2gff	.	69080591	69080876	0	.	.	.;
+chr16	bed2gff	.	740288	740602	0	.	.	.;
+chr19	bed2gff	.	11039250	11039594	0	.	.	.;
+chr17	bed2gff	.	30771317	30771592	0	.	.	.;
+chr1	bed2gff	.	10003302	10003624	0	.	.	.;
+chr13	bed2gff	.	41345218	41345502	0	.	.	.;
+chr16	bed2gff	.	31085463	31085852	0	.	.	.;
+chr9	bed2gff	.	131084619	131084946	0	.	.	.;
+chr1	bed2gff	.	28655398	28655693	0	.	.	.;
+chr21	bed2gff	.	30365080	30365419	0	.	.	.;
+chr2	bed2gff	.	55496260	55496554	0	.	.	.;
+chr5	bed2gff	.	102455722	102456060	0	.	.	.;
+chr7	bed2gff	.	127983843	127984113	0	.	.	.;
+chr1	bed2gff	.	155112892	155113167	0	.	.	.;
+chr19	bed2gff	.	50879460	50879818	0	.	.	.;
+chr16	bed2gff	.	2653190	2653529	0	.	.	.;
+chr16	bed2gff	.	84220528	84220849	0	.	.	.;
+chr1	bed2gff	.	173683884	173684188	0	.	.	.;
+chr11	bed2gff	.	47600410	47600710	0	.	.	.;
+chr15	bed2gff	.	49447769	49448060	0	.	.	.;
+chr22	bed2gff	.	20861684	20862012	0	.	.	.;
+chr6	bed2gff	.	131949256	131949559	0	.	.	.;
+chr8	bed2gff	.	37707279	37707606	0	.	.	.;
+chr15	bed2gff	.	23810631	23810906	0	.	.	.;
+chr7	bed2gff	.	141437944	141438285	0	.	.	.;
+chr21	bed2gff	.	46359726	46360023	0	.	.	.;
+chr6	bed2gff	.	28219918	28220206	0	.	.	.;
+chr7	bed2gff	.	102987942	102988206	0	.	.	.;
+chr7	bed2gff	.	96746760	96747035	0	.	.	.;
+chr6	bed2gff	.	159420748	159421012	0	.	.	.;
+chr17	bed2gff	.	40925310	40925566	0	.	.	.;
+chr1	bed2gff	.	38455582	38455905	0	.	.	.;
+chr20	bed2gff	.	57226117	57226411	0	.	.	.;
+chrX	bed2gff	.	64754698	64754986	0	.	.	.;
+chr17	bed2gff	.	49230696	49231019	0	.	.	.;
+chr20	bed2gff	.	31989221	31989517	0	.	.	.;
+chr22	bed2gff	.	31555974	31556248	0	.	.	.;
+chr11	bed2gff	.	68671189	68671471	0	.	.	.;
+chr1	bed2gff	.	145096233	145096542	0	.	.	.;
+chr6	bed2gff	.	17707127	17707437	0	.	.	.;
+chr19	bed2gff	.	13885106	13885378	0	.	.	.;
+chr16	bed2gff	.	67260861	67261153	0	.	.	.;
+chr8	bed2gff	.	143751279	143751554	0	.	.	.;
+chr6	bed2gff	.	28104505	28104786	0	.	.	.;
+chr16	bed2gff	.	29801823	29802106	0	.	.	.;
+chr6	bed2gff	.	36842447	36842765	0	.	.	.;
+chr3	bed2gff	.	127842654	127842984	0	.	.	.;
+chr16	bed2gff	.	67906807	67907079	0	.	.	.;
+chr2	bed2gff	.	233415231	233415501	0	.	.	.;
+chr7	bed2gff	.	75677177	75677464	0	.	.	.;
+chr7	bed2gff	.	44240379	44240704	0	.	.	.;
+chr1	bed2gff	.	224301663	224301925	0	.	.	.;
+chr3	bed2gff	.	52029807	52030102	0	.	.	.;
+chr20	bed2gff	.	34824215	34824488	0	.	.	.;
+chr22	bed2gff	.	19419872	19420176	0	.	.	.;
+chr2	bed2gff	.	74681965	74682322	0	.	.	.;
+chr5	bed2gff	.	43515151	43515431	0	.	.	.;
+chr9	bed2gff	.	37800622	37800902	0	.	.	.;
+chr7	bed2gff	.	129691099	129691376	0	.	.	.;
+chr12	bed2gff	.	123459110	123459398	0	.	.	.;
+chr19	bed2gff	.	56146184	56146483	0	.	.	.;
+chr1	bed2gff	.	38478186	38478507	0	.	.	.;
+chr16	bed2gff	.	1823030	1823306	0	.	.	.;
+chr7	bed2gff	.	5553329	5553581	0	.	.	.;
+chr8	bed2gff	.	145133270	145133670	0	.	.	.;
+chr12	bed2gff	.	124086465	124086754	0	.	.	.;
+chr11	bed2gff	.	31391240	31391510	0	.	.	.;
+chr1	bed2gff	.	218458480	218458748	0	.	.	.;
+chr19	bed2gff	.	59031045	59031449	0	.	.	.;
+chr2	bed2gff	.	70120939	70121198	0	.	.	.;
+chr12	bed2gff	.	124118112	124118446	0	.	.	.;
+chr12	bed2gff	.	50794457	50794722	0	.	.	.;
+chr20	bed2gff	.	62612264	62612568	0	.	.	.;
+chr2	bed2gff	.	242041624	242041899	0	.	.	.;
+chr20	bed2gff	.	34638795	34639068	0	.	.	.;
+chr7	bed2gff	.	44530151	44530427	0	.	.	.;
+chr10	bed2gff	.	1102536	1102869	0	.	.	.;
+chr13	bed2gff	.	52768476	52768744	0	.	.	.;
+chr16	bed2gff	.	2732287	2732616	0	.	.	.;
+chr16	bed2gff	.	1470652	1471004	0	.	.	.;
+chr19	bed2gff	.	59010761	59011062	0	.	.	.;
+chr5	bed2gff	.	167913289	167913559	0	.	.	.;
+chr16	bed2gff	.	28857523	28857833	0	.	.	.;
+chr20	bed2gff	.	44485922	44486239	0	.	.	.;
+chr18	bed2gff	.	33552457	33552728	0	.	.	.;
+chr1	bed2gff	.	46153686	46153989	0	.	.	.;
+chr1	bed2gff	.	20834539	20834840	0	.	.	.;
+chr15	bed2gff	.	34517028	34517331	0	.	.	.;
+chr5	bed2gff	.	93954202	93954466	0	.	.	.;
+chr8	bed2gff	.	11141764	11142084	0	.	.	.;
+chr6	bed2gff	.	170893599	170893890	0	.	.	.;
+chr1	bed2gff	.	163291428	163291749	0	.	.	.;
+chr19	bed2gff	.	9938401	9938695	0	.	.	.;
+chr7	bed2gff	.	73668667	73668954	0	.	.	.;
+chr19	bed2gff	.	4182458	4182705	0	.	.	.;
+chr16	bed2gff	.	89787228	89787505	0	.	.	.;
+chr11	bed2gff	.	8710370	8710722	0	.	.	.;
+chr3	bed2gff	.	149470175	149470450	0	.	.	.;
+chr9	bed2gff	.	127177598	127177871	0	.	.	.;
+chr12	bed2gff	.	54582617	54582998	0	.	.	.;
+chr14	bed2gff	.	24657997	24658289	0	.	.	.;
+chr7	bed2gff	.	139024854	139025179	0	.	.	.;
+chr2	bed2gff	.	3622619	3622940	0	.	.	.;
+chr5	bed2gff	.	133702770	133703057	0	.	.	.;
+chr7	bed2gff	.	99097811	99098072	0	.	.	.;
+chr2	bed2gff	.	74699681	74699975	0	.	.	.;
+chr9	bed2gff	.	137029867	137030208	0	.	.	.;
+chr9	bed2gff	.	139294531	139294815	0	.	.	.;
+chr11	bed2gff	.	62358925	62359223	0	.	.	.;
+chr8	bed2gff	.	145158562	145158845	0	.	.	.;
+chr13	bed2gff	.	31191867	31192130	0	.	.	.;
+chr1	bed2gff	.	156710856	156711174	0	.	.	.;
+chr1	bed2gff	.	11322685	11323021	0	.	.	.;
+chr16	bed2gff	.	2771003	2771296	0	.	.	.;
+chr17	bed2gff	.	42264182	42264463	0	.	.	.;
+chr11	bed2gff	.	64037355	64037701	0	.	.	.;
+chr19	bed2gff	.	9879283	9879554	0	.	.	.;
+chr10	bed2gff	.	53459240	53459533	0	.	.	.;
+chr13	bed2gff	.	53191470	53191730	0	.	.	.;
+chr4	bed2gff	.	106629756	106630035	0	.	.	.;
+chr20	bed2gff	.	2451326	2451638	0	.	.	.;
+chr12	bed2gff	.	49110412	49110744	0	.	.	.;
+chr1	bed2gff	.	150039674	150039924	0	.	.	.;
+chr3	bed2gff	.	131221703	131221982	0	.	.	.;
+chr15	bed2gff	.	66161636	66161900	0	.	.	.;
+chr7	bed2gff	.	32529878	32530186	0	.	.	.;
+chr20	bed2gff	.	34542302	34542600	0	.	.	.;
+chr1	bed2gff	.	1342564	1342834	0	.	.	.;
+chr17	bed2gff	.	56429458	56429747	0	.	.	.;
+chr5	bed2gff	.	40835213	40835571	0	.	.	.;
+chrX	bed2gff	.	21857529	21857813	0	.	.	.;
+chr12	bed2gff	.	49961786	49962057	0	.	.	.;
+chr19	bed2gff	.	45582360	45582627	0	.	.	.;
+chr3	bed2gff	.	15468897	15469195	0	.	.	.;
+chr8	bed2gff	.	23351716	23351994	0	.	.	.;
+chr7	bed2gff	.	2281728	2281978	0	.	.	.;
+chr2	bed2gff	.	45838296	45838560	0	.	.	.;
+chr6	bed2gff	.	28367415	28367688	0	.	.	.;
+chr17	bed2gff	.	42092241	42092535	0	.	.	.;
+chr20	bed2gff	.	35917909	35918177	0	.	.	.;
+chr19	bed2gff	.	19302859	19303130	0	.	.	.;
+chr9	bed2gff	.	35103030	35103302	0	.	.	.;
+chr3	bed2gff	.	139062706	139062962	0	.	.	.;
+chr1	bed2gff	.	155990642	155990891	0	.	.	.;
+chr15	bed2gff	.	40674995	40675277	0	.	.	.;
+chr9	bed2gff	.	98638135	98638441	0	.	.	.;
+chr11	bed2gff	.	47429850	47430141	0	.	.	.;
+chr1	bed2gff	.	149982575	149982829	0	.	.	.;
+chr9	bed2gff	.	133454818	133455093	0	.	.	.;
+chr1	bed2gff	.	179851718	179851996	0	.	.	.;
+chr3	bed2gff	.	155572158	155572487	0	.	.	.;
+chr9	bed2gff	.	140473232	140473536	0	.	.	.;
+chr12	bed2gff	.	53574326	53574567	0	.	.	.;
+chr5	bed2gff	.	74062846	74063148	0	.	.	.;
+chr17	bed2gff	.	61678076	61678361	0	.	.	.;
+chr5	bed2gff	.	154033485	154033803	0	.	.	.;
+chr6	bed2gff	.	7389868	7390154	0	.	.	.;
+chr20	bed2gff	.	44992935	44993209	0	.	.	.;
+chr9	bed2gff	.	123555554	123555870	0	.	.	.;
+chr7	bed2gff	.	134855228	134855753	0	.	.	.;
+chr15	bed2gff	.	90437138	90437401	0	.	.	.;
+chr11	bed2gff	.	43902161	43902435	0	.	.	.;
+chr7	bed2gff	.	44084080	44084355	0	.	.	.;
+chr1	bed2gff	.	85725249	85725499	0	.	.	.;
+chr17	bed2gff	.	57287227	57287480	0	.	.	.;
+chr15	bed2gff	.	64679824	64680146	0	.	.	.;
+chr19	bed2gff	.	4246829	4247170	0	.	.	.;
+chr1	bed2gff	.	227922908	227923177	0	.	.	.;
+chr7	bed2gff	.	1609578	1609872	0	.	.	.;
+chr3	bed2gff	.	53381513	53381800	0	.	.	.;
+chr22	bed2gff	.	19419157	19419437	0	.	.	.;
+chr9	bed2gff	.	130700024	130700283	0	.	.	.;
+chr4	bed2gff	.	84377027	84377316	0	.	.	.;
+chr9	bed2gff	.	35812179	35812422	0	.	.	.;
+chr7	bed2gff	.	6616904	6617170	0	.	.	.;
+chr12	bed2gff	.	56223272	56223554	0	.	.	.;
+chr19	bed2gff	.	16770836	16771104	0	.	.	.;
+chr5	bed2gff	.	443139	443420	0	.	.	.;
+chr16	bed2gff	.	31044610	31044900	0	.	.	.;
+chr17	bed2gff	.	79633577	79633869	0	.	.	.;
+chr11	bed2gff	.	47270293	47270542	0	.	.	.;
+chr1	bed2gff	.	209957899	209958170	0	.	.	.;
+chr3	bed2gff	.	13493276	13493523	0	.	.	.;
+chr15	bed2gff	.	85259265	85259540	0	.	.	.;
+chr15	bed2gff	.	74753402	74753694	0	.	.	.;
+chr16	bed2gff	.	420428	420683	0	.	.	.;
+chr5	bed2gff	.	112196823	112197098	0	.	.	.;
+chr8	bed2gff	.	22461962	22462392	0	.	.	.;
+chr2	bed2gff	.	73964341	73964771	0	.	.	.;
+chr1	bed2gff	.	24117465	24117770	0	.	.	.;
+chr20	bed2gff	.	34287162	34287418	0	.	.	.;
+chr21	bed2gff	.	27107147	27107503	0	.	.	.;
+chr3	bed2gff	.	10362687	10362964	0	.	.	.;
+chr16	bed2gff	.	717947	718229	0	.	.	.;
+chr1	bed2gff	.	165737996	165738300	0	.	.	.;
+chr1	bed2gff	.	150459621	150459883	0	.	.	.;
+chr1	bed2gff	.	55181367	55181623	0	.	.	.;
+chr10	bed2gff	.	75490127	75490413	0	.	.	.;
+chr1	bed2gff	.	28969473	28969752	0	.	.	.;
+chr3	bed2gff	.	9404591	9404852	0	.	.	.;
+chr11	bed2gff	.	118888952	118889288	0	.	.	.;
+chr10	bed2gff	.	43278068	43278338	0	.	.	.;
+chr1	bed2gff	.	183441020	183441320	0	.	.	.;
+chr19	bed2gff	.	2950496	2950815	0	.	.	.;
+chr6	bed2gff	.	111303090	111303341	0	.	.	.;
+chr12	bed2gff	.	117348630	117348860	0	.	.	.;
+chr12	bed2gff	.	105629904	105630185	0	.	.	.;
+chr20	bed2gff	.	2644751	2645000	0	.	.	.;
+chr12	bed2gff	.	75905284	75905547	0	.	.	.;
+chr21	bed2gff	.	46221615	46221878	0	.	.	.;
+chr5	bed2gff	.	153418354	153418649	0	.	.	.;
+chr1	bed2gff	.	3541251	3541500	0	.	.	.;
+chr14	bed2gff	.	75179681	75179940	0	.	.	.;
+chr1	bed2gff	.	44435385	44435719	0	.	.	.;
+chr2	bed2gff	.	71357596	71357848	0	.	.	.;
+chr19	bed2gff	.	17530521	17530795	0	.	.	.;
+chr12	bed2gff	.	7079748	7080121	0	.	.	.;
+chr2	bed2gff	.	96971152	96971429	0	.	.	.;
+chr6	bed2gff	.	17600382	17600633	0	.	.	.;
+chr11	bed2gff	.	10772608	10772880	0	.	.	.;
+chr1	bed2gff	.	36554313	36554613	0	.	.	.;
+chr11	bed2gff	.	65479568	65479834	0	.	.	.;
+chr6	bed2gff	.	42185492	42185753	0	.	.	.;
+chr19	bed2gff	.	10216905	10217140	0	.	.	.;
+chr2	bed2gff	.	113299870	113300125	0	.	.	.;
+chr17	bed2gff	.	42343979	42344264	0	.	.	.;
+chr10	bed2gff	.	75503954	75504263	0	.	.	.;
+chr12	bed2gff	.	132195327	132195740	0	.	.	.;
+chr4	bed2gff	.	492858	493103	0	.	.	.;
+chr8	bed2gff	.	144363746	144364026	0	.	.	.;
+chr11	bed2gff	.	61559975	61560244	0	.	.	.;
+chr1	bed2gff	.	155904112	155904431	0	.	.	.;
+chr19	bed2gff	.	51963773	51964019	0	.	.	.;
+chr16	bed2gff	.	2097831	2098091	0	.	.	.;
+chr15	bed2gff	.	74988260	74988498	0	.	.	.;
+chr20	bed2gff	.	1373730	1373994	0	.	.	.;
+chr11	bed2gff	.	111957410	111957697	0	.	.	.;
+chr1	bed2gff	.	20987812	20988156	0	.	.	.;
+chr7	bed2gff	.	156742255	156742541	0	.	.	.;
+chr19	bed2gff	.	2740074	2740337	0	.	.	.;
+chr17	bed2gff	.	26662413	26662686	0	.	.	.;
+chr21	bed2gff	.	45432007	45432300	0	.	.	.;
+chr1	bed2gff	.	43637870	43638117	0	.	.	.;
+chr5	bed2gff	.	892814	893089	0	.	.	.;
+chr3	bed2gff	.	101280549	101280796	0	.	.	.;
+chr7	bed2gff	.	99214429	99214697	0	.	.	.;
+chr2	bed2gff	.	15731831	15732087	0	.	.	.;
+chr19	bed2gff	.	58892000	58892281	0	.	.	.;
+chr8	bed2gff	.	144373406	144373660	0	.	.	.;
+chr16	bed2gff	.	89160107	89160406	0	.	.	.;
+chr2	bed2gff	.	24299130	24299470	0	.	.	.;
+chr1	bed2gff	.	247267567	247267830	0	.	.	.;
+chr19	bed2gff	.	40476927	40477164	0	.	.	.;
+chr7	bed2gff	.	99679225	99679528	0	.	.	.;
+chr6	bed2gff	.	170863215	170863530	0	.	.	.;
+chr10	bed2gff	.	27443231	27443479	0	.	.	.;
+chr5	bed2gff	.	158690151	158690410	0	.	.	.;
+chr16	bed2gff	.	21610673	21610958	0	.	.	.;
+chr19	bed2gff	.	12721452	12721704	0	.	.	.;
+chr1	bed2gff	.	156163736	156163977	0	.	.	.;
+chr17	bed2gff	.	61627556	61627934	0	.	.	.;
+chr22	bed2gff	.	20012938	20013251	0	.	.	.;
+chr2	bed2gff	.	99224833	99225114	0	.	.	.;
+chr6	bed2gff	.	43484533	43484798	0	.	.	.;
+chr1	bed2gff	.	38273744	38274012	0	.	.	.;
+chr9	bed2gff	.	95432415	95432762	0	.	.	.;
+chr10	bed2gff	.	13628800	13629072	0	.	.	.;
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