Mercurial > repos > iuc > ivar_trim
changeset 3:5d6ed46cc101 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 47276c84cd0cd40084b7ccdf2e22c620ee1c10f6"
| author | iuc |
|---|---|
| date | Fri, 05 Jun 2020 04:12:52 -0400 |
| parents | cb903c9dc33d |
| children | db536ad45f28 |
| files | ivar_trim.xml macros.xml test-data/sars-cov-2/sars_cov2_trimmed.bam |
| diffstat | 3 files changed, 2 insertions(+), 3 deletions(-) [+] |
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--- a/ivar_trim.xml Wed Apr 22 06:05:42 2020 -0400 +++ b/ivar_trim.xml Fri Jun 05 04:12:52 2020 -0400 @@ -20,8 +20,7 @@ -s $window_width $inc_primers -p trimmed && - samtools sort -@ \${GALAXY_SLOTS:-1} -o trimmed.sorted.bam trimmed.bam && - samtools index -@ \${GALAXY_SLOTS:-1} trimmed.sorted.bam + samtools sort -@ \${GALAXY_SLOTS:-1} -o trimmed.sorted.bam trimmed.bam ]]> </command> <inputs> <param name="input_bam" argument="-i" type="data" format="bam" label="Bam file" help="Aligned reads, to trim primers and quality"/>
--- a/macros.xml Wed Apr 22 06:05:42 2020 -0400 +++ b/macros.xml Fri Jun 05 04:12:52 2020 -0400 @@ -1,5 +1,5 @@ <macros> - <token name="@VERSION@">1.2.1</token> + <token name="@VERSION@">1.2.2</token> <xml name="requirements"> <requirements> <requirement type="package" version="@VERSION@">ivar</requirement>