view test-data/zika/db/PRV.gff @ 17:abbc8041e8ec draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 32fbe8a14173afe0b39f1483afaba958dc6cd027
author iuc
date Fri, 21 Jun 2024 15:20:59 +0000
parents 38b91a3190cd
children
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##gff-version 3
#!gff-spec-version 1.21
#!processor NCBI annotwriter
#!genome-build ViralProj36615
#!genome-build-accession NCBI_Assembly:GCF_000882815.3
##sequence-region NC_012532.1 1 10794
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=64320
NC_012532.1	RefSeq	region	1	10794	.	+	.	ID=NC_012532.1:1..10794;Dbxref=taxon:64320;country=Uganda;gbkey=Src;genome=genomic;mol_type=genomic RNA;nat-host=sentinel monkey;note=mosquito-borne flavivirus;strain=MR 766
NC_012532.1	RefSeq	five_prime_UTR	1	106	.	+	.	ID=id-NC_012532.1:1..106;gbkey=5'UTR
NC_012532.1	RefSeq	gene	107	10366	.	+	.	ID=gene-ZIKV_gp1;Dbxref=GeneID:7751225;Name=POLY;gbkey=Gene;gene=POLY;gene_biotype=protein_coding;locus_tag=ZIKV_gp1
NC_012532.1	RefSeq	CDS	107	10366	.	+	0	ID=cds-YP_002790881.1;Parent=gene-ZIKV_gp1;Dbxref=Genbank:YP_002790881.1,GeneID:7751225;Name=YP_002790881.1;gbkey=CDS;gene=POLY;locus_tag=ZIKV_gp1;product=polyprotein;protein_id=YP_002790881.1
NC_012532.1	RefSeq	mature_protein_region_of_CDS	107	472	.	+	.	ID=id-YP_002790881.1:1..122;Parent=cds-YP_002790881.1;gbkey=Prot;product=anchored capsid protein ancC;protein_id=YP_009227206.1
NC_012532.1	RefSeq	mature_protein_region_of_CDS	107	418	.	+	.	ID=id-YP_002790881.1:1..104;Parent=cds-YP_002790881.1;gbkey=Prot;product=capsid protein C;protein_id=YP_009227196.1
NC_012532.1	RefSeq	mature_protein_region_of_CDS	473	976	.	+	.	ID=id-YP_002790881.1:123..290;Parent=cds-YP_002790881.1;gbkey=Prot;product=membrane glycoprotein precursor prM;protein_id=YP_009227197.1
NC_012532.1	RefSeq	mature_protein_region_of_CDS	473	751	.	+	.	ID=id-YP_002790881.1:123..215;Parent=cds-YP_002790881.1;gbkey=Prot;product=protein pr;protein_id=YP_009227207.1
NC_012532.1	RefSeq	mature_protein_region_of_CDS	752	976	.	+	.	ID=id-YP_002790881.1:216..290;Parent=cds-YP_002790881.1;gbkey=Prot;product=membrane glycoprotein M;protein_id=YP_009227208.1
NC_012532.1	RefSeq	mature_protein_region_of_CDS	977	2476	.	+	.	ID=id-YP_002790881.1:291..790;Parent=cds-YP_002790881.1;gbkey=Prot;product=envelope protein E;protein_id=YP_009227198.1
NC_012532.1	RefSeq	mature_protein_region_of_CDS	2477	3532	.	+	.	ID=id-YP_002790881.1:791..1142;Parent=cds-YP_002790881.1;gbkey=Prot;product=nonstructural protein NS1;protein_id=YP_009227199.1
NC_012532.1	RefSeq	mature_protein_region_of_CDS	3533	4210	.	+	.	ID=id-YP_002790881.1:1143..1368;Parent=cds-YP_002790881.1;gbkey=Prot;product=nonstructural protein NS2A;protein_id=YP_009227200.1
NC_012532.1	RefSeq	mature_protein_region_of_CDS	4211	4600	.	+	.	ID=id-YP_002790881.1:1369..1498;Parent=cds-YP_002790881.1;gbkey=Prot;product=nonstructural protein NS2B;protein_id=YP_009227201.1
NC_012532.1	RefSeq	mature_protein_region_of_CDS	4601	6451	.	+	.	ID=id-YP_002790881.1:1499..2115;Parent=cds-YP_002790881.1;gbkey=Prot;product=nonstructural protein NS3;protein_id=YP_009227202.1
NC_012532.1	RefSeq	mature_protein_region_of_CDS	6452	6832	.	+	.	ID=id-YP_002790881.1:2116..2242;Parent=cds-YP_002790881.1;gbkey=Prot;product=nonstructural protein NS4A;protein_id=YP_009227203.1
NC_012532.1	RefSeq	mature_protein_region_of_CDS	6833	6901	.	+	.	ID=id-YP_002790881.1:2243..2265;Parent=cds-YP_002790881.1;gbkey=Prot;product=protein 2K;protein_id=YP_009227209.1
NC_012532.1	RefSeq	mature_protein_region_of_CDS	6902	7654	.	+	.	ID=id-YP_002790881.1:2266..2516;Parent=cds-YP_002790881.1;gbkey=Prot;product=nonstructural protein NS4B;protein_id=YP_009227204.1
NC_012532.1	RefSeq	mature_protein_region_of_CDS	7655	10363	.	+	.	ID=id-YP_002790881.1:2517..3419;Parent=cds-YP_002790881.1;gbkey=Prot;product=RNA-dependent RNA polymerase NS5;protein_id=YP_009227205.1
NC_012532.1	RefSeq	three_prime_UTR	10367	10794	.	+	.	ID=id-NC_012532.1:10367..10794;gbkey=3'UTR
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