annotate test-data/endpoints/test.xml @ 26:08776ba76cf5 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 75f6e483debb4c0d388bf4a54df81ee89af598d5

<?xml version="1.0"?>
<root>
    <metadata>
        <gencode>11</gencode>
        <genomes>
              <genome path="/tmp/tmpdcb31B/files/000/dataset_24.dat">
                <metadata>
                  <dataset id="a1e670e1ea0da54b" hid="1"
                      size="171.6 KB"
                      edam_format="format_1929"
                      file_ext="fasta" />
                  <history id="a90a30fafe298e1e"
                      user_email="[e-mail]"
                      user_id="2"
                      display_name="test_history"/>
                  <metadata
                      dbkey="?"
                      data_lines="2881"
                      sequences="1"
                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.6"
                      />
                </metadata>
              </genome>
        </genomes>
        <general>
            <defaultLocation></defaultLocation>
            <trackPadding>20</trackPadding>

            <shareLink>true</shareLink>
            <aboutDescription></aboutDescription>
            <show_tracklist>true</show_tracklist>
            <show_nav>true</show_nav>
            <show_overview>true</show_overview>
            <show_menu>true</show_menu>
            <hideGenomeOptions>false</hideGenomeOptions>
        </general>
        <galaxyUrl>http://localhost</galaxyUrl>
    </metadata>
    <tracks>
        <track cat="External endpoints" format="rest" visibility="default_off">

            <options>
                <style>
                    <overridePlugins>False</overridePlugins>
                    <overrideDraggable>False</overrideDraggable>
                    <className>feature</className>
                    <description>Hit_titles</description>
                    <label>description</label>
                    <height>600px</height>
                    <maxHeight>600</maxHeight>
                </style>
                <scaling>
                        <method>ignore</method>
                        <scheme>
                            <color>__auto__</color>
                        </scheme>
                </scaling>
                <menus>
                </menus>

                <label>Rest api</label>
                <rest>
                    <url>http://example.org.external/rest_api/</url>
                </rest>
            </options>
        </track>
        <track cat="External endpoints" format="sparql" visibility="default_off">

            <options>
                <style>
                    <overridePlugins>False</overridePlugins>
                    <overrideDraggable>False</overrideDraggable>
                    <className>feature</className>
                    <description>Hit_titles</description>
                    <label>description</label>
                    <height>600px</height>
                    <maxHeight>600</maxHeight>
                </style>
                <scaling>
                        <method>ignore</method>
                        <scheme>
                            <color>__auto__</color>
                        </scheme>
                </scaling>
                <menus>
                </menus>

                <label>Sparql endpoint</label>
                <sparql>
                    <url>http://example.org.external/sparql/</url>
                    <query>  DEFINE sql:select-option 'order'   prefix rdf:    __lt__http://www.w3.org/1999/02/22-rdf-syntax-ns#__gt__   select ?start,          ?end,          IF( ?faldo_type = faldo:ForwardStrandPosition,              1,              IF( ?faldo_type = faldo:ReverseStrandPosition,                  -1,                   0                )            ) as ?strand,          str(?obj_type_name) as ?type,          str(?label) as ?name,          str(?obj_name) as ?description,          ?obj as ?uniqueID,          ?parent as ?parentUniqueID   where {     values ?faldo_type { faldo:ForwardStrandPosition faldo:ReverseStrandPosition faldo:BothStrandsPosition }   }</query>
                </sparql>
            </options>
        </track>
    </tracks>
    <plugins
        ComboTrackSelector=""
        Bookmarks=""
        GCContent=""
        BlastView="True"
        theme=""
        />
</root>