Mercurial > repos > iuc > jbrowse
changeset 26:08776ba76cf5 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 75f6e483debb4c0d388bf4a54df81ee89af598d5
| author | iuc |
|---|---|
| date | Tue, 19 Feb 2019 15:43:37 -0500 |
| parents | 1cfc579079a6 |
| children | 61ce21e36cb5 |
| files | jbrowse.xml macros.xml readme.rst |
| diffstat | 3 files changed, 15 insertions(+), 19 deletions(-) [+] |
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--- a/jbrowse.xml Tue Jan 29 05:34:16 2019 -0500 +++ b/jbrowse.xml Tue Feb 19 15:43:37 2019 -0500 @@ -276,10 +276,6 @@ #if str($track.data_format.track_config.canvas_options.impliedUTRs) != "false": <impliedUTRs>${track.data_format.track_config.canvas_options.impliedUTRs}</impliedUTRs> #end if - #else if $track.data_format.track_config.track_class == 'JBrowse/View/Track/HTMLFeatures': - #if str($track.data_format.track_config.html_options.transcriptType) != "": - <transcriptType>${track.data_format.track_config.html_options.transcriptType}</transcriptType> - #end if #end if #if $track.data_format.match_part.match_part_select: <match>${track.data_format.match_part.name}</match> @@ -461,8 +457,10 @@ <conditional name="track_config"> <param type="select" label="JBrowse Track Type [Advanced]" name="track_class"> + <option value="NeatHTMLFeatures/View/Track/NeatFeatures" selected="true">Neat HTML Features</option> + <option value="NeatCanvasFeatures/View/Track/NeatFeatures">Neat Canvas Features</option> <option value="JBrowse/View/Track/HTMLFeatures">HTML Features</option> - <option value="JBrowse/View/Track/CanvasFeatures" selected="true">Canvas Features</option> + <option value="JBrowse/View/Track/CanvasFeatures">Canvas Features</option> <option value="BlastView/View/Track/CanvasFeatures">Blast Features</option><!-- Disable plugins until https://github.com/GMOD/jbrowse/issues/1288 is fixed --> </param> <when value="JBrowse/View/Track/CanvasFeatures"> @@ -486,19 +484,12 @@ truevalue="true" falsevalue="false" help="Check this your input files does not contain UTR features, but the UTR can be 'implied' from the difference between the exon and CDS boundaries"/> - </section> - </when> - <when value="JBrowse/View/Track/HTMLFeatures"> - <section name="html_options" title="HTMLFeatures Options [Advanced]" expanded="false"> - <param label="Transcript type" - name="transcriptType" - type="text" - value="" - help="If your input files represents transcripts, give the name of the corresponding features here (e.g. 'mRNA' or 'transcript')" - optional="True"/> - </section> - </when> - <!--when value="BlastView/View/Track/CanvasFeatures" /--> + </section> + </when> + <when value="JBrowse/View/Track/HTMLFeatures" /> + <when value="BlastView/View/Track/CanvasFeatures" /> + <when value="NeatHTMLFeatures/View/Track/NeatFeatures" /> + <when value="NeatCanvasFeatures/View/Track/NeatFeatures" /> </conditional> <expand macro="track_styling" /> <expand macro="color_selection" />
--- a/macros.xml Tue Jan 29 05:34:16 2019 -0500 +++ b/macros.xml Tue Feb 19 15:43:37 2019 -0500 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <macros> - <token name="@TOOL_VERSION@">1.16.1</token> + <token name="@TOOL_VERSION@">1.16.2</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">jbrowse</requirement>
--- a/readme.rst Tue Jan 29 05:34:16 2019 -0500 +++ b/readme.rst Tue Feb 19 15:43:37 2019 -0500 @@ -25,6 +25,11 @@ History ======= +- 1.16.2+galaxy0 + + - UPDATED to JBrowse 1.16.2 + - ADDED support for NeatHTMLFeatures and NeatCanvasFeatures track types + - 1.16.1+galaxy0 - UPDATED to JBrowse 1.16.1