annotate test-data/bam/test.xml @ 17:ff11d442feed draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257

<?xml version="1.0"?>
<root>
    <metadata>
        <gencode>11</gencode>
        <genomes>
            <genome>test-data/merlin.fa</genome>
        </genomes>
        <general>
            <defaultLocation></defaultLocation>
            <trackPadding>40</trackPadding>
            <shareLink>true</shareLink>
            <aboutDescription></aboutDescription>
            <show_tracklist>true</show_tracklist>
            <show_nav>true</show_nav>
            <show_overview>false</show_overview>
            <show_menu>true</show_menu>
            <hideGenomeOptions>false</hideGenomeOptions>
        </general>
    </metadata>
    <tracks>
        <track cat="Default" format="pileup">
            <files>
                <trackFile path="test-data/bam/154.bam" ext="bam" label="Basic"/>
            </files>
            <options>
                <pileup>
                    <auto_snp>false</auto_snp>
                    <bam_indices>
                        <bam_index>test-data/bam/154.bam.bai</bam_index>
                    </bam_indices>
                </pileup>
            </options>
        </track>
        <track cat="Default" format="pileup">
            <files>
                <trackFile path="test-data/bam/154.bam" ext="bam" label="Auto-SNP"/>
            </files>
            <options>
                <pileup>
                    <auto_snp>true</auto_snp>
                    <bam_indices>
                        <bam_index>test-data/bam/154.bam.bai</bam_index>
                    </bam_indices>
                </pileup>
            </options>
        </track>
    </tracks>
</root>