diff macros.xml @ 27:61ce21e36cb5 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 0c51a106c04c2f56f5a172dd74c8494687870e46

--- a/macros.xml	Tue Feb 19 15:43:37 2019 -0500
+++ b/macros.xml	Wed Feb 20 11:50:21 2019 -0500
@@ -14,7 +14,7 @@
     </requirements>
   </xml>
   <token name="@DATA_DIR@">\$GALAXY_JBROWSE_SHARED_DIR</token>
-  <token name="@WRAPPER_VERSION@">galaxy0</token>
+  <token name="@WRAPPER_VERSION@">galaxy1</token>
   <token name="@ATTRIBUTION@"><![CDATA[
 **Attribution**
 
@@ -385,4 +385,39 @@
       <citation type="doi">10.1101/gr.094607.109</citation>
     </citations>
   </xml>
+
+  <xml name="canvas_options">
+      <section name="canvas_options" title="CanvasFeatures Options [Advanced]" expanded="false">
+          <param label="Transcript type"
+                 name="transcriptType"
+                 type="text"
+                 value=""
+                 help="If your input files represents transcripts with features not named 'mRNA', give the alternate name here (e.g. 'transcript')"
+                 optional="True"/>
+          <param label="Subfeatures type"
+                 name="subParts"
+                 type="text"
+                 value=""
+                 help="If you have 'exons' but no corresponding 'CDS' features, specify here the subfeatures that should be displayed (e.g. 'exon')"
+                 optional="True"/>
+          <param label="Implied UTRs"
+                 name="impliedUTRs"
+                 type="boolean"
+                 checked="false"
+                 truevalue="true"
+                 falsevalue="false"
+                 help="Check this your input files does not contain UTR features, but the UTR can be 'implied' from the difference between the exon and CDS boundaries"/>
+      </section>
+  </xml>
+
+  <xml name="html_options">
+      <section name="html_options" title="HTMLFeatures Options [Advanced]" expanded="false">
+          <param label="Top level features"
+                 name="topLevelFeatures"
+                 type="text"
+                 value="mRNA"
+                 help="Select which top level features should be displayed. If empty, will try to display all features. If your input files represents gene→mRNA→exon/CDS/UTR, you should use mRNA otherwise exons will not be rendered."
+                 optional="True"/>
+      </section>
+  </xml>
 </macros>