diff test-data/bed/test.xml @ 34:9de82b4963e6 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 0a26506563ff9b7fa683d3d0eaa16436c3560908"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/bed/test.xml	Wed Sep 11 09:40:36 2019 -0400
@@ -0,0 +1,136 @@
+<?xml version="1.0"?>
+<root>
+    <metadata>
+        <gencode>11</gencode>
+        <genomes>
+              <genome path="/tmp/tmpqkd9zdgq/files/2/3/a/dataset_23ae18d3-c882-4d06-a36e-5a061da14b2e.dat">
+                <metadata>
+                  <dataset id="7b55dbb89df8f4e5" hid="1"
+                      size="171.6 KB"
+                      edam_format="format_1929"
+                      file_ext="fasta" />
+                  <history id="54f2a3a23292eb07"
+                      user_email="[e-mail]"
+                      user_id="2"
+                      display_name="test_history"/>
+                  <metadata
+                      dbkey="?"
+                      data_lines="2881"
+                      sequences="1"
+                      />
+                  <tool
+                      tool_id="upload1"
+                      tool_version="1.1.6"
+                      />
+                </metadata>
+              </genome>
+        </genomes>
+        <general>
+            <defaultLocation></defaultLocation>
+            <trackPadding>20</trackPadding>
+
+            <shareLink>true</shareLink>
+            <aboutDescription></aboutDescription>
+            <show_tracklist>true</show_tracklist>
+            <show_nav>true</show_nav>
+            <show_overview>true</show_overview>
+            <show_menu>true</show_menu>
+            <hideGenomeOptions>false</hideGenomeOptions>
+        </general>
+        <galaxyUrl>http://localhost</galaxyUrl>
+    </metadata>
+    <tracks>
+        <track cat="Default" format="gene_calls" visibility="default_off">
+            <files>
+              <trackFile path="/tmp/tmpqkd9zdgq/files/1/0/3/dataset_103bde9a-c404-441e-99fc-cfaeb674e4ef.dat" ext="bed" label="test-3.bed">
+                <metadata>
+                  <dataset id="fa6d20d0fb68383f" hid="2"
+                      size="49 bytes"
+                      edam_format="format_3003"
+                      file_ext="bed" />
+                  <history id="54f2a3a23292eb07"
+                      user_email="[e-mail]"
+                      user_id="2"
+                      display_name="test_history"/>
+                  <metadata
+                      dbkey="?"
+                      data_lines="3"
+                      columns="3"
+                      delimiter="__tc__"
+                      chromCol="1"
+                      startCol="2"
+                      endCol="3"
+                      viz_filter_cols="[4]"
+                      />
+                  <tool
+                      tool_id="upload1"
+                      tool_version="1.1.6"
+                      />
+                </metadata>
+              </trackFile>
+              <trackFile path="/tmp/tmpqkd9zdgq/files/d/e/1/dataset_de110c59-5762-4148-ba67-f3571280eae6.dat" ext="bed" label="test-6.bed">
+                <metadata>
+                  <dataset id="683bc220e21425bb" hid="3"
+                      size="180 bytes"
+                      edam_format="format_3003"
+                      file_ext="bed" />
+                  <history id="54f2a3a23292eb07"
+                      user_email="[e-mail]"
+                      user_id="2"
+                      display_name="test_history"/>
+                  <metadata
+                      dbkey="?"
+                      data_lines="3"
+                      columns="6"
+                      delimiter="__tc__"
+                      chromCol="1"
+                      startCol="2"
+                      endCol="3"
+                      strandCol="6"
+                      nameCol="4"
+                      viz_filter_cols="[4]"
+                      />
+                  <tool
+                      tool_id="upload1"
+                      tool_version="1.1.6"
+                      />
+                </metadata>
+              </trackFile>
+            </files>
+
+            <options>
+                <style>
+                    <overridePlugins>False</overridePlugins>
+                    <overrideDraggable>False</overrideDraggable>
+                    <className>feature</className>
+                    <description>note,description</description>
+                    <label>product,name,id</label>
+                    <height>10px</height>
+                    <maxHeight>600</maxHeight>
+                </style>
+                <scaling>
+                        <method>ignore</method>
+                        <scheme>
+                            <color>__auto__</color>
+                        </scheme>
+                </scaling>
+                <menus>
+                </menus>
+                <custom_config>
+                </custom_config>
+
+                <gff>
+                    <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType>
+                    <index>false</index>
+                </gff>
+            </options>
+        </track>
+    </tracks>
+    <plugins
+        ComboTrackSelector=""
+        Bookmarks=""
+        GCContent=""
+        BlastView="True"
+        theme=""
+        />
+</root>