view test-data/bed/test.xml @ 34:9de82b4963e6 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 0a26506563ff9b7fa683d3d0eaa16436c3560908"

<?xml version="1.0"?>
<root>
    <metadata>
        <gencode>11</gencode>
        <genomes>
              <genome path="/tmp/tmpqkd9zdgq/files/2/3/a/dataset_23ae18d3-c882-4d06-a36e-5a061da14b2e.dat">
                <metadata>
                  <dataset id="7b55dbb89df8f4e5" hid="1"
                      size="171.6 KB"
                      edam_format="format_1929"
                      file_ext="fasta" />
                  <history id="54f2a3a23292eb07"
                      user_email="[e-mail]"
                      user_id="2"
                      display_name="test_history"/>
                  <metadata
                      dbkey="?"
                      data_lines="2881"
                      sequences="1"
                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.6"
                      />
                </metadata>
              </genome>
        </genomes>
        <general>
            <defaultLocation></defaultLocation>
            <trackPadding>20</trackPadding>

            <shareLink>true</shareLink>
            <aboutDescription></aboutDescription>
            <show_tracklist>true</show_tracklist>
            <show_nav>true</show_nav>
            <show_overview>true</show_overview>
            <show_menu>true</show_menu>
            <hideGenomeOptions>false</hideGenomeOptions>
        </general>
        <galaxyUrl>http://localhost</galaxyUrl>
    </metadata>
    <tracks>
        <track cat="Default" format="gene_calls" visibility="default_off">
            <files>
              <trackFile path="/tmp/tmpqkd9zdgq/files/1/0/3/dataset_103bde9a-c404-441e-99fc-cfaeb674e4ef.dat" ext="bed" label="test-3.bed">
                <metadata>
                  <dataset id="fa6d20d0fb68383f" hid="2"
                      size="49 bytes"
                      edam_format="format_3003"
                      file_ext="bed" />
                  <history id="54f2a3a23292eb07"
                      user_email="[e-mail]"
                      user_id="2"
                      display_name="test_history"/>
                  <metadata
                      dbkey="?"
                      data_lines="3"
                      columns="3"
                      delimiter="__tc__"
                      chromCol="1"
                      startCol="2"
                      endCol="3"
                      viz_filter_cols="[4]"
                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.6"
                      />
                </metadata>
              </trackFile>
              <trackFile path="/tmp/tmpqkd9zdgq/files/d/e/1/dataset_de110c59-5762-4148-ba67-f3571280eae6.dat" ext="bed" label="test-6.bed">
                <metadata>
                  <dataset id="683bc220e21425bb" hid="3"
                      size="180 bytes"
                      edam_format="format_3003"
                      file_ext="bed" />
                  <history id="54f2a3a23292eb07"
                      user_email="[e-mail]"
                      user_id="2"
                      display_name="test_history"/>
                  <metadata
                      dbkey="?"
                      data_lines="3"
                      columns="6"
                      delimiter="__tc__"
                      chromCol="1"
                      startCol="2"
                      endCol="3"
                      strandCol="6"
                      nameCol="4"
                      viz_filter_cols="[4]"
                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.6"
                      />
                </metadata>
              </trackFile>
            </files>

            <options>
                <style>
                    <overridePlugins>False</overridePlugins>
                    <overrideDraggable>False</overrideDraggable>
                    <className>feature</className>
                    <description>note,description</description>
                    <label>product,name,id</label>
                    <height>10px</height>
                    <maxHeight>600</maxHeight>
                </style>
                <scaling>
                        <method>ignore</method>
                        <scheme>
                            <color>__auto__</color>
                        </scheme>
                </scaling>
                <menus>
                </menus>
                <custom_config>
                </custom_config>

                <gff>
                    <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType>
                    <index>false</index>
                </gff>
            </options>
        </track>
    </tracks>
    <plugins
        ComboTrackSelector=""
        Bookmarks=""
        GCContent=""
        BlastView="True"
        theme=""
        />
</root>