comparison jellyfish.xml @ 2:dcd30574a456 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jellyfish commit aa8360cb3ec9faf1488938a430855977632706ff

1:11658afb8c87

<tool id="jellyfish" name="jellyfish" version="@WRAPPER_VERSION@+@VERSION_SUFFIX@" profile="20.01">
    <macros>
        <token name="@WRAPPER_VERSION@">2.3.0</token>
        <token name="@VERSION_SUFFIX@">galaxy0</token>
    </macros>
    <xrefs>
        <xref type="bio.tools">Jellyfish</xref>
    </xrefs>
    <requirements>

    <command detect_errors="exit_code"><![CDATA[
        jellyfish
        #if $commands.command == "count":
            count
            --mer-len $commands.mer_len
            --size $commands.size
            #if $commands.counter_len:
                --counter-len $commands.counter_len
            #end if
            $commands.canonical
            #if $commands.bloom.filters == "bc":

                <option value="query"/> -->
            </param>
            <when value="count">
                <param name="input" type="data" format="fasta,fastq,fastqsanger" label="Input data file"/>
                <param argument="--mer-len" type="integer" value="20" min="1" label="Length of mer" />
                <param argument="--size" type="integer" value="32" min="1" label="Initial hash size" />
                <param argument="--counter-len" type="integer" min="1" optional="true" label="Counter Length in bits" />
                <param argument="--canonical" type="boolean" truevalue="--canonical" falsevalue="" label="Count both strand and canonical representation" />
                <conditional name="bloom">
                    <param name="filters" type="select" label="Use bloom filters">
                        <option value="default">Default</option>

2:dcd30574a456

<tool id="jellyfish" name="jellyfish" version="@WRAPPER_VERSION@+@VERSION_SUFFIX@" profile="20.01">
    <macros>
        <token name="@WRAPPER_VERSION@">2.3.0</token>
        <token name="@VERSION_SUFFIX@">galaxy1</token>
    </macros>
    <xrefs>
        <xref type="bio.tools">Jellyfish</xref>
    </xrefs>
    <requirements>

    <command detect_errors="exit_code"><![CDATA[
        jellyfish
        #if $commands.command == "count":
            count
            --mer-len $commands.mer_len
            --size ${commands.size}M
            #if $commands.counter_len:
                --counter-len $commands.counter_len
            #end if
            $commands.canonical
            #if $commands.bloom.filters == "bc":

                <option value="query"/> -->
            </param>
            <when value="count">
                <param name="input" type="data" format="fasta,fastq,fastqsanger" label="Input data file"/>
                <param argument="--mer-len" type="integer" value="20" min="1" label="Length of mer" />
                <param argument="--size" type="integer" value="32" min="1" label="Initial hash size in Million (M)" />
                <param argument="--counter-len" type="integer" min="1" optional="true" label="Counter Length in bits" />
                <param argument="--canonical" type="boolean" truevalue="--canonical" falsevalue="" label="Count both strand and canonical representation" />
                <conditional name="bloom">
                    <param name="filters" type="select" label="Use bloom filters">
                        <option value="default">Default</option>