view tool-data/fasta_indexes.loc.sample @ 3:ac048a34cac3 draft default tip

"planemo upload for repository https://github.com/galaxyproject/iuc/tree/master/tools/jvarkit commit 7224953c0b42f43a91dc76ee1015f355a311b391"

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−#This is a sample file distributed with Galaxy that enables tools
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−#to use a directory of Samtools indexed sequences data files.  You will need
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−#to create these data files and then create a fasta_indexes.loc file
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−#similar to this one (store it in this directory) that points to
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−#the directories in which those files are stored. The fasta_indexes.loc
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−#file has this format (white space characters are TAB characters):
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−#
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−# <unique_build_id>	<dbkey>	<display_name>	<file_base_path>
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−#
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−#So, for example, if you had hg19 Canonical indexed stored in
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−#
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−# /depot/data2/galaxy/hg19/sam/,
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−#
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−#then the fasta_indexes.loc entry would look like this:
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−#
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−#hg19canon	hg19	Human (Homo sapiens): hg19 Canonical	/depot/data2/galaxy/hg19/sam/hg19canon.fa
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−#
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−#and your /depot/data2/galaxy/hg19/sam/ directory
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−#would contain hg19canon.fa and hg19canon.fa.fai files.
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−#
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−#Your fasta_indexes.loc file should include an entry per line for
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−#each index set you have stored.  The file in the path does actually
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−#exist, but it should never be directly used. Instead, the name serves
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−#as a prefix for the index file.  For example:
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−#
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−#hg18canon	hg18	Human (Homo sapiens): hg18 Canonical	/depot/data2/galaxy/hg18/sam/hg18canon.fa
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−#hg18full	hg18	Human (Homo sapiens): hg18 Full	/depot/data2/galaxy/hg18/sam/hg18full.fa
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−#hg19canon	hg19	Human (Homo sapiens): hg19 Canonical	/depot/data2/galaxy/hg19/sam/hg19canon.fa
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−#hg19full	hg19	Human (Homo sapiens): hg19 Full	/depot/data2/galaxy/hg19/sam/hg19full.fa
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−#sars-cov-2	SARS-CoV-2	SARS-CoV-2 (MN908947.3)	/depot/data/MN908947_3_Wuhan-Hu-1.fasta
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−