comparison abundance-dist.xml @ 7:e0de12ae3fc2 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/khmer commit 7de685f4763d988a5a9abce4a9c2b4714daaf165"

6:5a97c5bbd51e

<tool id="khmer_abundance_distribution" name="Abundance Distribution" version="@WRAPPER_VERSION@.0">
    <description>
        Calculate abundance distribution of k-mers using pre-made k-mer countgraphs
    </description>
    <macros>
        <token name="@BINARY@">abundance-dist.py</token>

    </macros>
    <expand macro="requirements" />
    <expand macro="stdio" />
    <expand macro="version" />
    <command><![CDATA[
set -xu &&
mkdir output && cd output &&
@BINARY@
--squash
${zero}
${bigcount}
${input_countgraph_filename}

                    <has_text text="1001,2,98,1.0" />
                </assert_contents>
            </output>
        </test>
        <test>
            <param name="input_sequence_filename" value="test-abund-read-2.fa" />
            <param name="input_countgraph_filename" value="test-abund-read-2.oxlicg" ftype="oxlicg" />
            <param name="zero" value="false" />
            <param name="bigcount" value="false" />
            <output name="output_histogram_filename">
                <assert_contents>

7:e0de12ae3fc2

<tool id="khmer_abundance_distribution" name="khmer: Abundance Distribution" version="@WRAPPER_VERSION@@TOOL_VERSION@">
    <description>
        Calculate abundance distribution of k-mers using pre-made k-mer countgraphs
    </description>
    <macros>
        <token name="@BINARY@">abundance-dist.py</token>

    </macros>
    <expand macro="requirements" />
    <expand macro="stdio" />
    <expand macro="version" />
    <command><![CDATA[
set -u &&
@BINARY@
--squash
${zero}
${bigcount}
${input_countgraph_filename}

                    <has_text text="1001,2,98,1.0" />
                </assert_contents>
            </output>
        </test>
        <test>
            <param name="input_sequence_filename" value="test-abund-read-2.fa.gz" />
            <param name="input_countgraph_filename" value="test-abund-read-2.oxlicg" ftype="oxlicg" />
            <param name="zero" value="false" />
            <param name="bigcount" value="false" />
            <output name="output_histogram_filename">
                <assert_contents>