Mercurial > repos > iuc > khmer_abundance_distribution

diff abundance-dist.xml @ 7:e0de12ae3fc2 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/khmer commit 7de685f4763d988a5a9abce4a9c2b4714daaf165"
author iuc
date Wed, 18 Dec 2019 15:59:06 -0500
parents be929aa4e152
children c0caca5af183
line wrap: on
line diff
--- a/abundance-dist.xml	Fri Sep 07 10:59:06 2018 -0400
+++ b/abundance-dist.xml	Wed Dec 18 15:59:06 2019 -0500
@@ -1,4 +1,4 @@
-<tool id="khmer_abundance_distribution" name="Abundance Distribution" version="@WRAPPER_VERSION@.0">
+<tool id="khmer_abundance_distribution" name="khmer: Abundance Distribution" version="@WRAPPER_VERSION@@TOOL_VERSION@">
     <description>
         Calculate abundance distribution of k-mers using pre-made k-mer countgraphs
     </description>
@@ -10,8 +10,7 @@
     <expand macro="stdio" />
     <expand macro="version" />
     <command><![CDATA[
-set -xu &&
-mkdir output && cd output &&
+set -u &&
 @BINARY@
 --squash
 ${zero}
@@ -43,7 +42,7 @@
             </output>
         </test>
         <test>
-            <param name="input_sequence_filename" value="test-abund-read-2.fa" />
+            <param name="input_sequence_filename" value="test-abund-read-2.fa.gz" />
             <param name="input_countgraph_filename" value="test-abund-read-2.oxlicg" ftype="oxlicg" />
             <param name="zero" value="false" />
             <param name="bigcount" value="false" />