comparison abundance-dist-single.xml @ 7:55109291a355 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/khmer commit 7de685f4763d988a5a9abce4a9c2b4714daaf165"

6:09c6a051c5fd

<tool id="khmer_abundance_distribution_single" name="Abundance Distribution (all-in-one)" version="@WRAPPER_VERSION@.0">
    <description>
        Calculate abundance distribution of k-mers
    </description>
    <macros>
        <token name="@BINARY@">abundance-dist-single.py</token>

    </macros>
    <expand macro="requirements" />
    <expand macro="stdio" />
    <expand macro="version" />
    <command><![CDATA[
set -xu &&
mkdir output && cd output &&
@BINARY@
@TABLEPARAMS@
${zero}
${bigcount}
#if $save_countgraph

]]>
    </command>
    <inputs>
        <expand macro="input_sequence_filename" />
        <param name="save_countgraph" type="boolean" label="Save the k-mer countgraph to a file"
            help="(--savegraph)" />
        <expand macro="input_zero" />
        <expand macro="input_bigcount" />
        <expand macro="tableinputs" />
    </inputs>
    <outputs>
        <data name="optional_output_countgraph" format="oxlicg" label="${tool.name} k-mer countgraph">
            <filter>save_countgraph == True</filter>
        </data>
        <expand macro="abundance-histogram-output" />
    </outputs>
    <tests>

7:55109291a355

<tool id="khmer_abundance_distribution_single" name="khmer: Abundance Distribution (all-in-one)" version="@WRAPPER_VERSION@@TOOL_VERSION@">
    <description>
        Calculate abundance distribution of k-mers
    </description>
    <macros>
        <token name="@BINARY@">abundance-dist-single.py</token>

    </macros>
    <expand macro="requirements" />
    <expand macro="stdio" />
    <expand macro="version" />
    <command><![CDATA[
set -u &&
@BINARY@
@TABLEPARAMS@
${zero}
${bigcount}
#if $save_countgraph

]]>
    </command>
    <inputs>
        <expand macro="input_sequence_filename" />
        <param argument="--savegraph" name="save_countgraph" type="boolean" label="Save the k-mer countgraph to a file"
            help="" />
        <expand macro="input_zero" />
        <expand macro="input_bigcount" />
        <expand macro="tableinputs" />
    </inputs>
    <outputs>
        <data name="optional_output_countgraph" format="oxlicg" label="${tool.name} on ${on_string} k-mer countgraph">
            <filter>save_countgraph == True</filter>
        </data>
        <expand macro="abundance-histogram-output" />
    </outputs>
    <tests>