diff abundance-dist-single.xml @ 7:55109291a355 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/khmer commit 7de685f4763d988a5a9abce4a9c2b4714daaf165"

--- a/abundance-dist-single.xml	Fri Sep 07 10:59:39 2018 -0400
+++ b/abundance-dist-single.xml	Wed Dec 18 16:04:44 2019 -0500
@@ -1,4 +1,4 @@
-<tool id="khmer_abundance_distribution_single" name="Abundance Distribution (all-in-one)" version="@WRAPPER_VERSION@.0">
+<tool id="khmer_abundance_distribution_single" name="khmer: Abundance Distribution (all-in-one)" version="@WRAPPER_VERSION@@TOOL_VERSION@">
     <description>
         Calculate abundance distribution of k-mers
     </description>
@@ -10,8 +10,7 @@
     <expand macro="stdio" />
     <expand macro="version" />
     <command><![CDATA[
-set -xu &&
-mkdir output && cd output &&
+set -u &&
 @BINARY@
 @TABLEPARAMS@
 ${zero}
@@ -28,14 +27,14 @@
     </command>
     <inputs>
         <expand macro="input_sequence_filename" />
-        <param name="save_countgraph" type="boolean" label="Save the k-mer countgraph to a file"
-            help="(--savegraph)" />
+        <param argument="--savegraph" name="save_countgraph" type="boolean" label="Save the k-mer countgraph to a file"
+            help="" />
         <expand macro="input_zero" />
         <expand macro="input_bigcount" />
         <expand macro="tableinputs" />
     </inputs>
     <outputs>
-        <data name="optional_output_countgraph" format="oxlicg" label="${tool.name} k-mer countgraph">
+        <data name="optional_output_countgraph" format="oxlicg" label="${tool.name} on ${on_string} k-mer countgraph">
             <filter>save_countgraph == True</filter>
         </data>
         <expand macro="abundance-histogram-output" />