Mercurial > repos > iuc > khmer_filter_abundance
changeset 5:a4970dfc331c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 19ea4feff5ccf3744c549b9a67259947a1cb90ba
| author | iuc |
|---|---|
| date | Sat, 21 Jan 2017 14:43:16 -0500 |
| parents | 1ab159863b55 |
| children | dbe616d126b1 |
| files | filter-below-abund.py |
| diffstat | 1 files changed, 3 insertions(+), 4 deletions(-) [+] |
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--- a/filter-below-abund.py Mon Nov 14 17:50:39 2016 -0500 +++ b/filter-below-abund.py Sat Jan 21 14:43:16 2017 -0500 @@ -34,18 +34,17 @@ # # Contact: khmer-project@idyll.org from __future__ import print_function + +import os import sys -import os + import khmer from khmer.thread_utils import ThreadedSequenceProcessor, verbose_fasta_iter WORKER_THREADS = 8 GROUPSIZE = 100 - CUTOFF = 50 -### - def main(): counting_ht = sys.argv[1]